HHsearch results for GI: 254781111 and protein with PDBid: 2q80_A
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=0 Score=342.54 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7157999998750-586007999999999961788222240246888899999864776544532234455665432434
Q gi|254781111|r 35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE 113 (237)
Q Consensus 35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~ 113 (237)
.++.+.+|++|.+ .||||+||.|+++++++++.+++.+.++|+++|++|+|||||||| ||+|++|||+||+|.+||+
T Consensus 9 ~~~~l~e~~~y~~~~gGKr~Rp~L~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~G~ 86 (301)
T 2q80_A 9 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGI 86 (301)
T ss_dssp HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCH
T ss_conf 02799999999985899629999999999881998899999999999999999982764--6799888999971200573
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 520133222233479999731023412678888876532223566411332221000----0003679999999863489
Q gi|254781111|r 114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE----FIDETQVFMIQKMKTGALM 189 (237)
Q Consensus 114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~----~~~~~~y~~i~~~KTa~lf 189 (237)
+.|||+||+|++.+++.++....+. .+..++++ ...++.||.+|+.+. .+++++|+.|+.+|||+||
T Consensus 87 ~~Ail~Gd~l~~~a~~~~~~~~~~~-------~~~~~~~~--~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf 157 (301)
T 2q80_A 87 PSVINSANYVYFLGLEKVLTLDHPD-------AVKLFTRQ--LLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLF 157 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTT-------HHHHHHHH--HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8899998899988887641012489-------99999999--99987050458776402566769999999987269999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999759888999999999999849999986765344320
Q gi|254781111|r 190 CFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 190 ~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
.+||.+|++++|.+++ +.+||+++|++|||+||++|++||.
T Consensus 158 ~~~~~~ga~~~~~~e~----l~~~g~~lG~afQi~DD~lD~~~~~ 198 (301)
T 2q80_A 158 GLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKE 198 (301)
T ss_dssp HHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998887764235689----9999999999998658878601885