HHsearch results for GI: 254781111 and protein with PDBid: 2q80_A

>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00  E-value=0  Score=342.54  Aligned_cols=185  Identities=25%  Similarity=0.298  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7157999998750-586007999999999961788222240246888899999864776544532234455665432434
Q gi|254781111|r   35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE  113 (237)
Q Consensus        35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~  113 (237)
                      .++.+.+|++|.+ .||||+||.|+++++++++.+++.+.++|+++|++|+||||||||  ||+|++|||+||+|.+||+
T Consensus         9 ~~~~l~e~~~y~~~~gGKr~Rp~L~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~G~   86 (301)
T 2q80_A            9 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGI   86 (301)
T ss_dssp             HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCH
T ss_conf             02799999999985899629999999999881998899999999999999999982764--6799888999971200573


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             520133222233479999731023412678888876532223566411332221000----0003679999999863489
Q gi|254781111|r  114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE----FIDETQVFMIQKMKTGALM  189 (237)
Q Consensus       114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~----~~~~~~y~~i~~~KTa~lf  189 (237)
                      +.|||+||+|++.+++.++....+.       .+..++++  ...++.||.+|+.+.    .+++++|+.|+.+|||+||
T Consensus        87 ~~Ail~Gd~l~~~a~~~~~~~~~~~-------~~~~~~~~--~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf  157 (301)
T 2q80_A           87 PSVINSANYVYFLGLEKVLTLDHPD-------AVKLFTRQ--LLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLF  157 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCTT-------HHHHHHHH--HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8899998899988887641012489-------99999999--99987050458776402566769999999987269999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999759888999999999999849999986765344320
Q gi|254781111|r  190 CFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       190 ~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+||.+|++++|.+++    +.+||+++|++|||+||++|++||.
T Consensus       158 ~~~~~~ga~~~~~~e~----l~~~g~~lG~afQi~DD~lD~~~~~  198 (301)
T 2q80_A          158 GLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKE  198 (301)
T ss_dssp             HHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9998887764235689----9999999999998658878601885