HHsearch results for GI: 254781111 and protein with PDBid: 3ipi_A
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=356.80 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999976753024571579999987505-86007999999999961788222240246888899999864776
Q gi|254781111|r 14 KRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDL 92 (237)
Q Consensus 14 ~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI 92 (237)
+.|++.|++.+. ...++.+.++++|.+. ||||+||.|+++++++++++++.++++|+++|++|+||||||||
T Consensus 12 ~~v~~~l~~~~~-------~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~AaavEliH~asLIHDDi 84 (295)
T 3ipi_A 12 RYVEAGIKESIT-------LIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL 84 (295)
T ss_dssp HHHHHHHHHHHH-------TCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999998742-------1487689999999872895518799999999980999899999999999999999997775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--
Q ss_conf 544532234455665432434520133222233479999731023412678888876532223566411332221000--
Q gi|254781111|r 93 PSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE-- 170 (237)
Q Consensus 93 ~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~-- 170 (237)
||+|++|||+||+|.+||++.||++||+|++.+|++++...... ...+... ...++.||.+|+...
T Consensus 85 --~D~~~~RRG~pt~~~~~G~~~Ail~Gd~Ll~~a~~~l~~~~~~~--------~~~~~~~--~~~~~~gq~~d~~~~~~ 152 (295)
T 3ipi_A 85 --LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKV--------IQDFGKA--GMDMAEGEVLDLKLEDE 152 (295)
T ss_dssp --HHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCHHH--------HHHHHHH--HHHHHHHHHHHHC----
T ss_pred --CCCCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCHH--------HHHHHHH--HHHHHCCCHHHHHCCCC
T ss_conf --78985544578547761829999946999999988632025167--------9999999--99996662588741466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
..++++|++|+.+|||+||++||.+|++++|++++..+.+.+||.++|++|||+||++|++|+.
T Consensus 153 ~~~~~~y~~i~~~KT~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 216 (295)
T 3ipi_A 153 SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVV 216 (295)
T ss_dssp ---CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7889999999998999999999999999737999999999999999999999999999854898