HHsearch results for GI: 254781111 and protein with PDBid: 3kra_B
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00 E-value=0 Score=357.41 Aligned_cols=215 Identities=18% Similarity=0.308 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY 85 (237)
Q Consensus 7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a 85 (237)
..++.....|++.|++. ++...|..+.++++|.+ .||||+||.|++++|+++|++++.++++|+++|++|+|
T Consensus 3 ~y~~~i~~~i~~~l~~~-------~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~a 75 (274)
T 3kra_B 3 PYWAAIEADIERYLKKS-------ITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAA 75 (274)
T ss_dssp HHHHHHHHHHHHHHHHH-------CCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999976-------57689588999999998478862999999999999397999998999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98647765445322344556654324345201332222334799997310234---126788888765322235664113
Q gi|254781111|r 86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQL---KDNIRSQLMLSLTHNIGLQGMLGG 162 (237)
Q Consensus 86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~G 162 (237)
|||||||+ +|++++|||+||+|.+||++.|||+||+|++.+|+++++..... ......+.+..++++++..+++.|
T Consensus 76 sLIHDDI~-ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~G 154 (274)
T 3kra_B 76 AYVHEHLP-LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISG 154 (274)
T ss_dssp HHHHHTCC-CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHH
T ss_pred HHHHCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99981776-56532248999855564839999999999988999998558841024589999999999987768888712
Q ss_pred CCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3222100--000036799999998634899999999997598889999999999998499999867653
Q gi|254781111|r 163 QMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLD 229 (237)
Q Consensus 163 Q~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD 229 (237)
|.+|+.. ..++++.|..|+++|||+||++||++|++++|++++.++.+++||+++|++|||.||..+
T Consensus 155 q~~d~~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~a 223 (274)
T 3kra_B 155 LHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp HHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 589988406777789999999864539999999999998193999999999999995887322466535