HHsearch results for GI: 254781111 and protein with PDBid: 3kra_B

>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00  E-value=0  Score=357.41  Aligned_cols=215  Identities=18%  Similarity=0.308  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r    7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY   85 (237)
Q Consensus         7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a   85 (237)
                      ..++.....|++.|++.       ++...|..+.++++|.+ .||||+||.|++++|+++|++++.++++|+++|++|+|
T Consensus         3 ~y~~~i~~~i~~~l~~~-------~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~a   75 (274)
T 3kra_B            3 PYWAAIEADIERYLKKS-------ITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAA   75 (274)
T ss_dssp             HHHHHHHHHHHHHHHHH-------CCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999976-------57689588999999998478862999999999999397999998999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98647765445322344556654324345201332222334799997310234---126788888765322235664113
Q gi|254781111|r   86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQL---KDNIRSQLMLSLTHNIGLQGMLGG  162 (237)
Q Consensus        86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~G  162 (237)
                      |||||||+ +|++++|||+||+|.+||++.|||+||+|++.+|+++++.....   ......+.+..++++++..+++.|
T Consensus        76 sLIHDDI~-ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~G  154 (274)
T 3kra_B           76 AYVHEHLP-LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISG  154 (274)
T ss_dssp             HHHHHTCC-CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHH
T ss_pred             HHHHCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99981776-56532248999855564839999999999988999998558841024589999999999987768888712


Q ss_pred             CCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3222100--000036799999998634899999999997598889999999999998499999867653
Q gi|254781111|r  163 QMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLD  229 (237)
Q Consensus       163 Q~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD  229 (237)
                      |.+|+..  ..++++.|..|+++|||+||++||++|++++|++++.++.+++||+++|++|||.||..+
T Consensus       155 q~~d~~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~a  223 (274)
T 3kra_B          155 LHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS  223 (274)
T ss_dssp             HHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             589988406777789999999864539999999999998193999999999999995887322466535