HHsearch results for GI: 254781111 and protein with PDBid: 3lk5_A

>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00  E-value=0  Score=340.45  Aligned_cols=223  Identities=26%  Similarity=0.343  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC------CCCCCCCHHHH
Q ss_conf             999999999999999999767530245715--799999-875058600799999999996178------82222402468
Q gi|254781111|r    8 KLQENSKRIDTILDDLLLQTASHMQTQHND--RLLSAI-RYALLGGKKIRSFLVTECASLFNV------NHLTALRVGAA   78 (237)
Q Consensus         8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~--~l~~~~-~y~l~gGKr~R~~l~l~~~~~~~~------~~~~~~~~Aaa   78 (237)
                      ++.++.+.|++.+++++...........++  .+.+.+ +|.++||||+||.||+++++++++      +.+.++++|++
T Consensus        17 ~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~a   96 (380)
T 3lk5_A           17 DLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS   96 (380)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999999998876411361299999999986017845061999999999828876665237999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             88899999864776544532234455665432----------------43452013322223347999973102341267
Q gi|254781111|r   79 IECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQ----------------YDEVTAIIAGNGLLTYAFEIISSPKTQLKDNI  142 (237)
Q Consensus        79 vEllH~asLihDDI~~~D~s~~RRG~pt~h~~----------------~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~  142 (237)
                      +|++|+||||||||  ||+|++|||+||+|.+                ||+..||++||+|++.+++++++...  ....
T Consensus        97 iEllH~asLIHDDI--~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~--~~~~  172 (380)
T 3lk5_A           97 LEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGL--SAEA  172 (380)
T ss_dssp             HHHHHHHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred             HHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHH
T ss_conf             99999999972770--1599876898637652206799861453077770889999988999999998653167--7899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             88888765322235664113322210000---0036799999998634-8999999999975988899999999999984
Q gi|254781111|r  143 RSQLMLSLTHNIGLQGMLGGQMLDIQDEF---IDETQVFMIQKMKTGA-LMCFACESGAIMAHASQNEKERLRCFGENLG  218 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~---~~~~~y~~i~~~KTa~-lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG  218 (237)
                      ..+++..++..  ...++.||.+|+.+..   .+.+.|..++.+||++ +|.+||.+|++++|++++..+.+.+||.++|
T Consensus       173 ~~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG  250 (380)
T 3lk5_A          173 LARTRDAWRGM--RTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIG  250 (380)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999888--8888500568887512431038999999998874699999999887653499999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---HCC
Q ss_conf             999998676534432---067
Q gi|254781111|r  219 IIFQLADDLLDCEED---LPK  236 (237)
Q Consensus       219 iafQi~DD~lD~~~D---~~k  236 (237)
                      +||||+||++|++||   .||
T Consensus       251 iaFQI~DD~lD~~g~~~~~GK  271 (380)
T 3lk5_A          251 IAFQLRDDLLGVFGDPAITGK  271 (380)
T ss_dssp             HHHHHHHHHHHHHSCHHHHSS
T ss_pred             HHHHHHHHHHHHCCCHHHCCC
T ss_conf             999998888763089854699