HHsearch results for GI: 254781111 and protein with PDBid: 3lk5_A
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=340.45 Aligned_cols=223 Identities=26% Similarity=0.343 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC------CCCCCCCHHHH
Q ss_conf 999999999999999999767530245715--799999-875058600799999999996178------82222402468
Q gi|254781111|r 8 KLQENSKRIDTILDDLLLQTASHMQTQHND--RLLSAI-RYALLGGKKIRSFLVTECASLFNV------NHLTALRVGAA 78 (237)
Q Consensus 8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~--~l~~~~-~y~l~gGKr~R~~l~l~~~~~~~~------~~~~~~~~Aaa 78 (237)
++.++.+.|++.+++++...........++ .+.+.+ +|.++||||+||.||+++++++++ +.+.++++|++
T Consensus 17 ~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~a 96 (380)
T 3lk5_A 17 DLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS 96 (380)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999999998876411361299999999986017845061999999999828876665237999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 88899999864776544532234455665432----------------43452013322223347999973102341267
Q gi|254781111|r 79 IECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQ----------------YDEVTAIIAGNGLLTYAFEIISSPKTQLKDNI 142 (237)
Q Consensus 79 vEllH~asLihDDI~~~D~s~~RRG~pt~h~~----------------~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~ 142 (237)
+|++|+|||||||| ||+|++|||+||+|.+ ||+..||++||+|++.+++++++... ....
T Consensus 97 iEllH~asLIHDDI--~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~--~~~~ 172 (380)
T 3lk5_A 97 LEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGL--SAEA 172 (380)
T ss_dssp HHHHHHHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHH
T ss_conf 99999999972770--1599876898637652206799861453077770889999988999999998653167--7899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 88888765322235664113322210000---0036799999998634-8999999999975988899999999999984
Q gi|254781111|r 143 RSQLMLSLTHNIGLQGMLGGQMLDIQDEF---IDETQVFMIQKMKTGA-LMCFACESGAIMAHASQNEKERLRCFGENLG 218 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~---~~~~~y~~i~~~KTa~-lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG 218 (237)
..+++..++.. ...++.||.+|+.+.. .+.+.|..++.+||++ +|.+||.+|++++|++++..+.+.+||.++|
T Consensus 173 ~~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG 250 (380)
T 3lk5_A 173 LARTRDAWRGM--RTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIG 250 (380)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999888--8888500568887512431038999999998874699999999887653499999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HCC
Q ss_conf 999998676534432---067
Q gi|254781111|r 219 IIFQLADDLLDCEED---LPK 236 (237)
Q Consensus 219 iafQi~DD~lD~~~D---~~k 236 (237)
+||||+||++|++|| .||
T Consensus 251 iaFQI~DD~lD~~g~~~~~GK 271 (380)
T 3lk5_A 251 IAFQLRDDLLGVFGDPAITGK 271 (380)
T ss_dssp HHHHHHHHHHHHHSCHHHHSS
T ss_pred HHHHHHHHHHHHCCCHHHCCC
T ss_conf 999998888763089854699