HHsearch results for GI: 254781111 and protein with PDBid: 3llw_A
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori}
Probab=100.00 E-value=0 Score=336.83 Aligned_cols=229 Identities=32% Similarity=0.493 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC------CCCCCC
Q ss_conf 98348999999999999999999997675302457157999998750-58600799999999996178------822224
Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNV------NHLTAL 73 (237)
Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~------~~~~~~ 73 (237)
|+.+.|. +. +.++..+.+++++.+......... +.+.+++.|.+ +||||+||.||++++.++++ +.+.++
T Consensus 1 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~-p~l~~~~~~~~~~GGKr~Rp~l~l~~~~al~g~~~~~~~~~~~~ 77 (311)
T 3llw_A 1 MSLSSPN-LS-FYYNECERFESFLKNHHLHLESFH-PYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYF 77 (311)
T ss_dssp -CCCCHH-HH-HHHHHHHHHHHHHHTCCCCCCSSC-SSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHH
T ss_pred CCCCCCC-HH-HHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 9989854-68-999999999999997366405778-17999999998589851349999999998648764576579999
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 02468888999998647765445322344556654324345201332222334799997310234126788888765322
Q gi|254781111|r 74 RVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHN 153 (237)
Q Consensus 74 ~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
++|++||++|+|||||||||+||+|++|||+||+|++||+..||++||++++.+++++........ ............
T Consensus 78 ~lA~aiELlH~asLIhDDI~~mD~s~~RRG~pt~h~~~g~~~ai~~gd~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 155 (311)
T 3llw_A 78 KIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESH--IIVELIKILSAN 155 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHH
T ss_conf 999999999999999808602466545799876545432289998652888889999873132047--899999999999
Q ss_pred HHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23566411332221000--00036799999998634899999999997598-8899999999999984999998676534
Q gi|254781111|r 154 IGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDC 230 (237)
Q Consensus 154 ~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~ 230 (237)
.+..+++.||..+.... ..+++.|..|+..||+++|.+++.+|+++++. +++..+.+++||.++|++|||+||++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~ 235 (311)
T 3llw_A 156 GGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDV 235 (311)
T ss_dssp HSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999988999887412578999999999985889998999999998863543789999999999989989737988853
Q ss_pred HHHH
Q ss_conf 4320
Q gi|254781111|r 231 EEDL 234 (237)
Q Consensus 231 ~~D~ 234 (237)
+||.
T Consensus 236 ~gd~ 239 (311)
T 3llw_A 236 TQDE 239 (311)
T ss_dssp HC--
T ss_pred CCCH
T ss_conf 4888