HHsearch results for GI: 254781111 and protein with PDBid: 3lom_A
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=0 Score=351.08 Aligned_cols=225 Identities=36% Similarity=0.556 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999999999999999999997675302457157999998750-586007999999999961788222240246888899
Q gi|254781111|r 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237)
Q Consensus 5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237)
.+..+.++.++++..+++++.+. .. .++.+.++++|.+ .||||+||.|+++++++++++++.+.++|++||++|
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~----~~-~~~~l~~~~~y~~~~GGKr~Rp~l~l~~~~~~~~~~~~~~~~A~aiEllH 83 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEI----II-PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTH 83 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----CC-CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999999987635----79-84789999998870796419999999999985988889999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99986477654453223445566543243452013322223347999973102-34126788888765322235664113
Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKT-QLKDNIRSQLMLSLTHNIGLQGMLGG 162 (237)
Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~G 162 (237)
++|||||||||||+|++|||+||+|.+||+..||++||++++.+++.+..... ..+..........+..+.+..+++.|
T Consensus 84 ~asLIHDDI~~mD~s~~RRG~pt~h~~~g~~~Ai~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g 163 (313)
T 3lom_A 84 CYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSG 163 (313)
T ss_dssp HHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99997477403587644567975778865488898755688999887533101225388899999999997300342144
Q ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3222100---00003679999999863489999999-999759888999999999999849999986765344320
Q gi|254781111|r 163 QMLDIQD---EFIDETQVFMIQKMKTGALMCFACES-GAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 163 Q~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~-ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
|..|+.. ..++.+.|++|+++|||+||.+++.+ |+++++.+++..+.+.+||.++|++|||+||++|++||.
T Consensus 164 ~~~d~~~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~ 239 (313)
T 3lom_A 164 QSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPT 239 (313)
T ss_dssp HHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
T ss_conf 0467777740468899999999985377988779999998443227899999999999998802321421024898