HHsearch results for GI: 254781111 and protein with PDBid: 3lsn_A
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=100.00 E-value=0 Score=359.62 Aligned_cols=228 Identities=34% Similarity=0.578 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 48999999999999999999997675302457157999998750-58600799999999996178822224024688889
Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECI 82 (237)
Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEll 82 (237)
.+++.+.....+||..+++++... ....+.+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++
T Consensus 2 ~l~~~~~~~~~~id~~l~~~~~~~-----~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEll 76 (304)
T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAP-----SPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELI 76 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCS-----SGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 868999999999999999860558-----973578999999884498205999999999998499989999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999986477654453223445566543243452013322223347999973102341-2678888876532223566411
Q gi|254781111|r 83 HCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLK-DNIRSQLMLSLTHNIGLQGMLG 161 (237)
Q Consensus 83 H~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 161 (237)
|+||||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++.+...... ...............+..++..
T Consensus 77 H~asLiHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (304)
T 3lsn_A 77 HAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVG 156 (304)
T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999961775567777789877754444519999987999997999850423220179999998789999988999987
Q ss_pred CCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf 33222100--00003679999999863489999999999759-888999999999999849999986765344320---6
Q gi|254781111|r 162 GQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAH-ASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P 235 (237)
Q Consensus 162 GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~ 235 (237)
+|..+... ...++++|.+|++.|||+||.++|.+|+++++ .+++..+.+.+||.++|++|||+||++|++||. |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~G 236 (304)
T 3lsn_A 157 GQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLG 236 (304)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 68888752102455699999999998999999999999985654067999999999999999999999876228965519
Q ss_pred C
Q ss_conf 7
Q gi|254781111|r 236 K 236 (237)
Q Consensus 236 k 236 (237)
|
T Consensus 237 K 237 (304)
T 3lsn_A 237 K 237 (304)
T ss_dssp -
T ss_pred C
T ss_conf 8