HHsearch results for GI: 254781111 and protein with PDBid: 3m0g_A
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=0 Score=357.14 Aligned_cols=220 Identities=38% Similarity=0.637 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 48999999999999999999997675302457157999998750586007999999999961788222240246888899
Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237)
Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237)
++.++|++..+.|+..+.+.+... .+..+.++++|+++||||+||.|++++++++|++++.++++|+|||++|
T Consensus 2 ~l~~~l~~~~~~v~~~l~~~~~~~-------~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH 74 (297)
T 3m0g_A 2 SLSERLKEVQDAVETAMAAAIGRL-------PAGDLRDAMAYAAQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALH 74 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTS-------CCSHHHHHHHHHHSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 879999999999999999986438-------8088999998474575189999999999880969899999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99986477654453223445566543243452013322223347999973102341267888887653222356641133
Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ 163 (237)
Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 163 (237)
+||||||||+++|+|++|||+||+|.+||++.|||+||++++.+|+++++...... ............+.+..+++.||
T Consensus 75 ~asLIHDDI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~q 153 (297)
T 3m0g_A 75 AYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA-ENRVALVAALAQASGAEGMVYGQ 153 (297)
T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCH-HHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999187646898744489964687708547677511787767999875201208-88999999999999999999773
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2221000----0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 164 MLDIQDE----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 164 ~~dl~~~----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
..++... ..+++.|++|+.+|||+||.++|.+|+++++.++. .+.+||+++|++|||+||++|++||.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~~---~~~~~g~~lG~aFQi~DDlld~~gd~ 225 (297)
T 3m0g_A 154 ALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNE 225 (297)
T ss_dssp HHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 7988866226307899999987999999999999989987499789---99987788888999888988731787