HHsearch results for GI: 254781111 and protein with PDBid: 3n3d_A
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00 E-value=0 Score=328.59 Aligned_cols=208 Identities=27% Similarity=0.355 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999997675302457157999998750-5860079999999999617882-222402468888999998647765
Q gi|254781111|r 16 IDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLP 93 (237)
Q Consensus 16 id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~ 93 (237)
|+..+..+.......+.. .++.+.++++|.+ .||||+||.+++++++++++.. +.+.++|+++|++|+||||||||
T Consensus 14 i~~~l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI- 91 (335)
T 3n3d_A 14 VEPQLTALQDYLLRTVQL-DNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV- 91 (335)
T ss_dssp THHHHHHHHHHHHHHCCC-SCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999999999999987078-866899999999958985589999999998769997788999999999999999984675-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---H
Q ss_conf 4453223445566543243452013322223347999973102341267888887653222356641133222100---0
Q gi|254781111|r 94 SMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---E 170 (237)
Q Consensus 94 ~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---~ 170 (237)
||+|++|||+||+|.+||++.|||+||+|++.+|+.+...... ..... .++.+. ..++.||..++.. .
T Consensus 92 -~D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~--~~~~~----~~~~~~--~~~~~g~~~~~~~~~~~ 162 (335)
T 3n3d_A 92 -IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD--RSLIQ----NHIDAM--HRILQGELHQMDLNYRE 162 (335)
T ss_dssp -HTTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH----HHHHHH--HHHHHHHHHHHHTTTCT
T ss_pred -CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHH----HHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf -4799877885332000008899997539999999840000001--79999----999988--99987789998750277
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
.+++++|+.++.+|||+||.++|.+|+++++++++....+.+||.++|++|||+||++|++||.
T Consensus 163 ~~~~~~y~~~i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~ 226 (335)
T 3n3d_A 163 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP 226 (335)
T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8899999999998688899999998774102425777999998777788988756765324887