HHsearch results for GI: 254781111 and protein with PDBid: 3p8r_A

>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=100.00  E-value=0  Score=362.81  Aligned_cols=223  Identities=38%  Similarity=0.584  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r    7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY   85 (237)
Q Consensus         7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a   85 (237)
                      +.|+++++++++.+++++...    + .....+.++++|.+ .||||+||.|++++++++|++.+.+.++|+|||++|+|
T Consensus        11 e~l~~~~~~~~~~l~~~l~~~----~-~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~a   85 (302)
T 3p8r_A           11 EALSSYQQRNNQQLDQWLNRI----P-FQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAY   85 (302)
T ss_dssp             THHHHHHHHHHHHHHHHHHTC----S-CTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999998627----8-99853999999885288004999999999998099846668999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9864776544532234455665432434520133222233479999731023412-678888876532223566411332
Q gi|254781111|r   86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKD-NIRSQLMLSLTHNIGLQGMLGGQM  164 (237)
Q Consensus        86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GQ~  164 (237)
                      |||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++++....... .........+....+..+++.||.
T Consensus        86 sLIHDDi~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  165 (302)
T 3p8r_A           86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA  165 (302)
T ss_dssp             HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99841673456321015888610024839999997899988999987336542117889999999999999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22100--000036799999998634899999999997598-88999999999999849999986765344320
Q gi|254781111|r  165 LDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       165 ~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+...  +.+++++|..|+.+|||+||.++|.+|+++++. +++..+.+.+||+++|++|||+||++|++||.
T Consensus       166 ~~~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~  238 (302)
T 3p8r_A          166 LDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT  238 (302)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             9862236789999999999999989999999988875057756789999998899886788975876602886