HHsearch results for GI: 254781111 and protein with PDBid: 3p8r_A
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=362.81 Aligned_cols=223 Identities=38% Similarity=0.584 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY 85 (237)
Q Consensus 7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a 85 (237)
+.|+++++++++.+++++... + .....+.++++|.+ .||||+||.|++++++++|++.+.+.++|+|||++|+|
T Consensus 11 e~l~~~~~~~~~~l~~~l~~~----~-~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~a 85 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRI----P-FQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAY 85 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTC----S-CTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998627----8-99853999999885288004999999999998099846668999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9864776544532234455665432434520133222233479999731023412-678888876532223566411332
Q gi|254781111|r 86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKD-NIRSQLMLSLTHNIGLQGMLGGQM 164 (237)
Q Consensus 86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GQ~ 164 (237)
|||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++++....... .........+....+..+++.||.
T Consensus 86 sLIHDDi~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (302)
T 3p8r_A 86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA 165 (302)
T ss_dssp HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99841673456321015888610024839999997899988999987336542117889999999999999999999999
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100--000036799999998634899999999997598-88999999999999849999986765344320
Q gi|254781111|r 165 LDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 165 ~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
.+... +.+++++|..|+.+|||+||.++|.+|+++++. +++..+.+.+||+++|++|||+||++|++||.
T Consensus 166 ~~~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~ 238 (302)
T 3p8r_A 166 LDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302)
T ss_dssp HHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9862236789999999999999989999999988875057756789999998899886788975876602886