HHsearch results for GI: 254781111 and protein with PDBid: 3pde_A
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=0 Score=369.96 Aligned_cols=226 Identities=32% Similarity=0.541 Sum_probs=193.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC--CCCCCCHHH
Q ss_conf 98348999999999999999999997675302457157999998750-586007999999999961788--222240246
Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN--HLTALRVGA 77 (237)
Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~--~~~~~~~Aa 77 (237)
|+..+.+..+++.++|++.|++.+.. ...+..+.++++|.+ .||||+||.|++++++++|++ ++.++++|+
T Consensus 4 ~~~~l~~f~~~~~~~i~~~l~~~l~~------~~~~~~l~~a~~y~l~~GGKriRp~L~l~~~~~~g~~~~~~~~~~~A~ 77 (309)
T 3pde_A 4 INARLIAFEDQWVPALNAPLKQAILA------DSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVM 77 (309)
T ss_dssp EEHHHHHHHHHHHHHHHTTHHHHHHH------TCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 67999999999999999999998751------699678999999887179440869999999998099977188999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88889999986477654453223445566543243452013322223347999973102341267888887653222356
Q gi|254781111|r 78 AIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQ 157 (237)
Q Consensus 78 avEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (237)
|+|++|++||||||||+||+|++|||+||+|++||++.||++||+|++.+|+++++... +.......+..+..+.+..
T Consensus 78 avEllH~asLIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~l~~~~~~~ 155 (309)
T 3pde_A 78 ALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL--PATMQAALVQALATAAGPS 155 (309)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999858050366555577777134416099998888888789999975010--1377889999999999999
Q ss_pred HHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 641133222100--00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 158 GMLGGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 158 ~l~~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
++..||..|... ..+++++|..|+++|||+||.++|.+|++++|++++..+.+.+||.++|++|||+||++|++||.
T Consensus 156 ~~~~~~~~d~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~ 234 (309)
T 3pde_A 156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9984520111001011139999999998888888999999999816618889999987776566788589887623897