RPSBLAST alignment of GI: 254781111 and protein with PDBid: 1wy0
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} Length = 342
Score = 90.1 bits (222), Expect = 4e-19
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECAS 63
L ++++E +K ID + +L+ + L A R+ L GGK++R F+V
Sbjct: 7 LFARIKEKAKLIDEKIFELI-------PEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTE 59
Query: 64 LFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGL 123
+ L A+ AIE IH YSL+HDD MD RRGKPTVH + AI+AG+ L
Sbjct: 60 AVGGDPLRAIYPAVAIELIHNYSLVHDD--IMDMDETRRGKPTVHRIWGVNMAILAGDLL 117
Query: 124 LTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKM 183
+ AFE ++ + + R ++ N L + + + + +
Sbjct: 118 FSKAFEAVARAEIPPEKKARVLEVIVKASN-ELCEGQARDLEFEKKSTVTIEEYMEMISG 176
Query: 184 KTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
KTGAL + + G I+ ++ + L +G N+GI FQ+ DD+LD D
Sbjct: 177 KTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIAD 226