RPSBLAST alignment of GI: 254781111 and protein with PDBid: 2j1p
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A Length = 293
Score = 115 bits (289), Expect = 8e-27
Identities = 78/234 (33%), Positives = 120/234 (51%), Gaps = 14/234 (5%)
Query: 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLF 65
S + + ++ LD + + ++ A+RY+LL GGK++R L L
Sbjct: 15 SYIIRKADSVNKALDSAV-------PLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELV 67
Query: 66 NVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLT 125
A+ A+E IH SLIHDDLP MDN +RRGKPT H Y E A++AG+ LL+
Sbjct: 68 GGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLS 127
Query: 126 YAFEI-ISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF-----IDETQVFM 179
+AFE S+ +++ + + L IG +G++ GQ++DI E + +
Sbjct: 128 FAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKF 187
Query: 180 IQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
I KT AL+ + G I+ S E ERLR F +G++FQ+ DD+LD +
Sbjct: 188 IHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS 241