RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3llw
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Length = 311
Score = 147 bits (371), Expect = 2e-36
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECAS-- 63
S +R ++ L + L S + L A +L GGK+ R L
Sbjct: 9 SFYYNECERFESFLKNHHLHLESF-----HPYLEKAFFEMVLNGGKRFRPKLFLAVLCAL 63
Query: 64 ----LFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIA 119
++ ++ +IEC+H YSLIHDDLP MDN +RR PT+H +YDE TA++
Sbjct: 64 VGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLI 123
Query: 120 GNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQV 177
G+ L TY+FE++ L+ +I +L+ L+ N G++GM+ GQ LD E ++ Q+
Sbjct: 124 GDALNTYSFELL--SNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQL 181
Query: 178 FMIQKMKTGALMCFACESGAIMAHASQNEKER-LRCFGENLGIIFQLADDLLDCEED 233
+ + KT L+ + G + + E + L+ FG +G+ FQ+ DD++D +D
Sbjct: 182 TFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238