RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3lmd

>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} Length = 360

 Score =  146 bits (370), Expect = 4e-36
 Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 24/233 (10%)

Query: 5   LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECAS 63
           L +++ +   +++ +L   L        +   D L+  + +    GGK+ R       + 
Sbjct: 36  LTARINDAMVQVEELLHTEL--------SSGEDFLVDIVMHLTRAGGKRFRPMFALLASE 87

Query: 64  LFNVN-HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNG 122
                     ++    +E  H  +L HDD+  MD   +RRG P+ + ++D   AI+AG+ 
Sbjct: 88  FGEKPLSENVIKAAVVVEITHLATLYHDDV--MDEASMRRGVPSANARWDNSVAILAGDI 145

Query: 123 LLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDET--QVFMI 180
           LL +A  ++S         + +  +       G   ++ GQM +       +       +
Sbjct: 146 LLAHASGLMS--------QLGTDTVAHFAETFG--ELVTGQMRETVGPRDTDPIEHYTNV 195

Query: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
            + KTG L+  A   GA+ A A+    + L+ FG  +G+IFQ+ DD++D   +
Sbjct: 196 IREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSE 248