RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3m0g

>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297
 Score =  154 bits (390), Expect = 1e-38
 Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 15/233 (6%)

Query: 5   LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASL 64
           L  +L+E    ++T +   +              L  A+ YA  GGK++R+FL  E A++
Sbjct: 3   LSERLKEVQDAVETAMAAAI-------GRLPAGDLRDAMAYAAQGGKRLRAFLAIESAAI 55

Query: 65  FNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLL 124
             ++   A+    A+E +H YSL+HDD+P MDN  +RRG PTVH ++D+ TA++AG+ L 
Sbjct: 56  HGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQ 115

Query: 125 TYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFID----ETQVFMI 180
           T AFE+ + P        R  L+ +L    G +GM+ GQ LDI  E         ++  +
Sbjct: 116 TLAFELCTDP-VLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRL 174

Query: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
           Q  KTGAL+ FA ++GAI+A A +     L  +   LG+ FQ+ADD+LD E +
Sbjct: 175 QAGKTGALISFAAQAGAILAGADRGP---LTAYATALGLAFQIADDILDVEGN 224