BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781111|ref|YP_003065524.1| geranyltranstransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (237 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 237

 Score =  488 bits (1257), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE 60
           MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE
Sbjct: 1   MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE 60

Query: 61  CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120
           CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG
Sbjct: 61  CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120

Query: 121 NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI 180
           NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI
Sbjct: 121 NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI 180

Query: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK 237
           QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK
Sbjct: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK 237


>gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 322

 Score = 80.5 bits (197), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 11/190 (5%)

Query: 42  AIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYI 100
            ++Y +  GGK++R  L    A +        + +  AIE IH  +L+HDD+  +D+  +
Sbjct: 33  VVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV--VDDSAL 90

Query: 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIG-LQGM 159
           RRGK    + +   T+++ G+ LL+ AF ++   K+Q  + + +  +++ T   G L+ +
Sbjct: 91  RRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ--EALEALSLVACTLAEGELRQL 148

Query: 160 LGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGI 219
              + LD+ +E         + K KT  L   A E  +++A    + ++ L+ +G NLGI
Sbjct: 149 SLSKNLDVTEE-----DYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGI 203

Query: 220 IFQLADDLLD 229
            FQL DD+LD
Sbjct: 204 AFQLVDDVLD 213


>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 281

 Score = 24.6 bits (52), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 147 MLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGAL 188
           +LS    I +   L G  LD+Q  FI+ T     Q ++ G L
Sbjct: 70  ILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNL 111


>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 24.6 bits (52), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4   GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLS-AIRYALLGGKKIRSF 56
           G+P+  + + K ++ I   L  +T  H QT   D L S +++ +L+  K  R++
Sbjct: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322


>gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 232

 Score = 24.3 bits (51), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 77  AAIECIHCYSLIHDDLPSMDNGYIRRGK 104
           A++ C HC    +     +++ YI+ GK
Sbjct: 73  ASMTCFHCAEFHNKTFKYLEDKYIKTGK 100


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1775

 Score = 22.7 bits (47), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 159  MLGGQMLDIQDEFIDETQVFMIQ 181
            M+  Q +  Q++FI++TQ+ M Q
Sbjct: 1150 MIWQQQVKTQEDFIEDTQLDMAQ 1172


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 22.7 bits (47), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 164 MLDIQDEFIDETQVFMIQKMKTGALMCFAC 193
           + DI DE ID +  + +Q      L   AC
Sbjct: 513 LRDIIDEIIDSSTTYTLQDRIENILATMAC 542


>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 366

 Score = 22.7 bits (47), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 51 KKIRSFLVTECASLFNVNHLTALRVGA 77
          ++IRS L    AS+ +++ L A+RV  
Sbjct: 12 ERIRSSLYNSIASVTDMDSLNAIRVAT 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,708
Number of Sequences: 1233
Number of extensions: 5688
Number of successful extensions: 14
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 237
length of database: 328,796
effective HSP length: 71
effective length of query: 166
effective length of database: 241,253
effective search space: 40047998
effective search space used: 40047998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)