BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] (237 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 237 Score = 488 bits (1257), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/237 (100%), Positives = 237/237 (100%) Query: 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE 60 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE Sbjct: 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTE 60 Query: 61 CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120 CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG Sbjct: 61 CASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120 Query: 121 NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI 180 NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI Sbjct: 121 NGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMI 180 Query: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK 237 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK Sbjct: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLPKK 237 >gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 322 Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 11/190 (5%) Query: 42 AIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYI 100 ++Y + GGK++R L A + + + AIE IH +L+HDD+ +D+ + Sbjct: 33 VVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV--VDDSAL 90 Query: 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIG-LQGM 159 RRGK + + T+++ G+ LL+ AF ++ K+Q + + + +++ T G L+ + Sbjct: 91 RRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ--EALEALSLVACTLAEGELRQL 148 Query: 160 LGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGI 219 + LD+ +E + K KT L A E +++A + ++ L+ +G NLGI Sbjct: 149 SLSKNLDVTEE-----DYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGI 203 Query: 220 IFQLADDLLD 229 FQL DD+LD Sbjct: 204 AFQLVDDVLD 213 >gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 24.6 bits (52), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 147 MLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGAL 188 +LS I + L G LD+Q FI+ T Q ++ G L Sbjct: 70 ILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNL 111 >gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLS-AIRYALLGGKKIRSF 56 G+P+ + + K ++ I L +T H QT D L S +++ +L+ K R++ Sbjct: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322 >gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust. Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 77 AAIECIHCYSLIHDDLPSMDNGYIRRGK 104 A++ C HC + +++ YI+ GK Sbjct: 73 ASMTCFHCAEFHNKTFKYLEDKYIKTGK 100 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 22.7 bits (47), Expect = 5.7, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 159 MLGGQMLDIQDEFIDETQVFMIQ 181 M+ Q + Q++FI++TQ+ M Q Sbjct: 1150 MIWQQQVKTQEDFIEDTQLDMAQ 1172 >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 22.7 bits (47), Expect = 6.4, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 164 MLDIQDEFIDETQVFMIQKMKTGALMCFAC 193 + DI DE ID + + +Q L AC Sbjct: 513 LRDIIDEIIDSSTTYTLQDRIENILATMAC 542 >gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 366 Score = 22.7 bits (47), Expect = 6.5, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 51 KKIRSFLVTECASLFNVNHLTALRVGA 77 ++IRS L AS+ +++ L A+RV Sbjct: 12 ERIRSSLYNSIASVTDMDSLNAIRVAT 38 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.138 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,708 Number of Sequences: 1233 Number of extensions: 5688 Number of successful extensions: 14 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 10 length of query: 237 length of database: 328,796 effective HSP length: 71 effective length of query: 166 effective length of database: 241,253 effective search space: 40047998 effective search space used: 40047998 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)