HHsearch alignment for GI: 254781112 and conserved domain: CHL00180
>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=97.07 E-value=0.02 Score=34.69 Aligned_cols=177 Identities=10% Similarity=0.080 Sum_probs=104.7
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHH
Q ss_conf 8589589996289987248704699848898852167899762-998555668988988643103221100-00367567
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPER 115 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR 115 (274)
T Consensus 92 ~~~g~lrI~~~~s~~~-------------~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~ 158 (307)
T CHL00180 92 LQGGTLIIGASQTTGT-------------YLMPRLIGLFRQKYPQIAVQLQVHSTRRIAWSVANGQIDLAIIGGEVPTEL 158 (307)
T ss_pred CCCCCCCCCCCCHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 1258601010406666-------------643588999999888997278977999999999879800999757788666
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEE-EECCCHHH----HHHHCCCCC------CEEECCHHHH
Q ss_conf 5420023332222222221112222----1111123343202-31010122----332013454------2133685577
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVA-QILGTDLS----RFAKELKSH------LVFSHNFEQS 180 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~-~~~g~~~~----~~l~~~~~~------~~~~~~~~~~ 180 (274)
T Consensus 159 ~~~l~-~~~l~~~~~~lv~~~~hpla~~~~v~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (307)
T CHL00180 159 KDNLQ-VTPYAEDELALILPKSHPFAKLKKIQKEDLYRLRFIALDSQSTIRKVIDNILIQNGIDSSRFKIEMELNSIEAI 237 (307)
T ss_pred CCCEE-EEEEECCCEEEEECCCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 78549-99943242799973898022399999999817984871799968999999999769984554279997809999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 77554432100366558999999845876673262-367768770799981899
Q gi|254781112|r 181 LQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 181 ~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 238 ~~~v~~g~Gi-a~lP~~~v~~~~~~----g~l~~~~~~~~~~~r~i~lv~~~~r 286 (307)
T CHL00180 238 KNAVQSGLGA-AFVSVSAIEKELEL----GTLHWAKIENITIKRTLSIITNPNR 286 (307)
T ss_pred HHHHHHCCEE-EECCHHHHHHHHHC----CCEEEEECCCCCCEEEEEEEEECCC
T ss_conf 9999939949-98259999989877----9889997899985049999997959