HHsearch alignment for GI: 254781112 and conserved domain: COG0687
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].
Probab=94.11 E-value=0.46 Score=26.25 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=94.0
Q ss_pred EHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCC--CCCCHHCCCCHH------------------------HHH-------
Q ss_conf 1678997629985556689-889886431032--211000036756------------------------754-------
Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETA-VSGLITGLDTNR--YDVLVNVAITPE------------------------RQK------- 117 (274)
Q Consensus 72 l~~~i~~~lg~~~~~~~~~-~~~~~~~l~~g~--~D~~~~~~~t~e------------------------R~~------- 117 (274)
T Consensus 47 ~~~~F~k~tGi~V~~~~~~sne~~~ak~~~g~~~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~ 126 (363)
T COG0687 47 LLKPFEKETGIKVVYDTFDSNEEMLAKLKAGGGGYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDP 126 (363)
T ss_pred HHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCC
T ss_conf 89989999899799953898699999998089998879718889999986675675896666482116987835776788
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCC---------CCCCEEEEC-------------C----CHHHH-----
Q ss_conf 2002333222222222111222----21111123---------343202310-------------1----01223-----
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDL---------TDKTVAQIL-------------G----TDLSR----- 162 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL---------~g~~V~~~~-------------g----~~~~~----- 162 (274)
T Consensus 127 g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a 206 (363)
T COG0687 127 GNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKA 206 (363)
T ss_pred CCEECEEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88603167886469999800058999998899983842002232575301366057899999971899788998899999
Q ss_pred --HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC--HHHHH
Q ss_conf --32013454213368557777554432100366558999999845876673262367768770799981899--89999
Q gi|254781112|r 163 --FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN--NKLTR 238 (274)
Q Consensus 163 --~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~L~~ 238 (274)
T Consensus 207 ~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~ 286 (363)
T COG0687 207 FDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAY 286 (363)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHH
T ss_conf 99999727850899636278889866997899977778999862558980577347887347878899879999989999
Q ss_pred -HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf -9999999999798599999876788
Q gi|254781112|r 239 -SINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 239 -~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
T Consensus 287 ~fInf~~~-----pe~~a~~~~~~~y 307 (363)
T COG0687 287 KFINFLLD-----PEVAAKLAEFVGY 307 (363)
T ss_pred HHHHHHCC-----HHHHHHHHHHHCC
T ss_conf 99998519-----8999999873267