HHsearch alignment for GI: 254781112 and conserved domain: COG0687

>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].
Probab=94.11  E-value=0.46  Score=26.25  Aligned_cols=187  Identities=19%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             EHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCC--CCCCHHCCCCHH------------------------HHH-------
Q ss_conf             1678997629985556689-889886431032--211000036756------------------------754-------
Q gi|254781112|r   72 LIKEVAHRLNLKVEFFETA-VSGLITGLDTNR--YDVLVNVAITPE------------------------RQK-------  117 (274)
Q Consensus        72 l~~~i~~~lg~~~~~~~~~-~~~~~~~l~~g~--~D~~~~~~~t~e------------------------R~~-------  117 (274)
T Consensus        47 ~~~~F~k~tGi~V~~~~~~sne~~~ak~~~g~~~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~  126 (363)
T COG0687          47 LLKPFEKETGIKVVYDTFDSNEEMLAKLKAGGGGYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDP  126 (363)
T ss_pred             HHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCC
T ss_conf             89989999899799953898699999998089998879718889999986675675896666482116987835776788


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCC---------CCCCEEEEC-------------C----CHHHH-----
Q ss_conf             2002333222222222111222----21111123---------343202310-------------1----01223-----
Q gi|254781112|r  118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDL---------TDKTVAQIL-------------G----TDLSR-----  162 (274)
Q Consensus       118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL---------~g~~V~~~~-------------g----~~~~~-----  162 (274)
T Consensus       127 g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a  206 (363)
T COG0687         127 GNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKA  206 (363)
T ss_pred             CCEECEEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             88603167886469999800058999998899983842002232575301366057899999971899788998899999


Q ss_pred             --HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC--HHHHH
Q ss_conf             --32013454213368557777554432100366558999999845876673262367768770799981899--89999
Q gi|254781112|r  163 --FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN--NKLTR  238 (274)
Q Consensus       163 --~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~L~~  238 (274)
T Consensus       207 ~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~  286 (363)
T COG0687         207 FDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAY  286 (363)
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHH
T ss_conf             99999727850899636278889866997899977778999862558980577347887347878899879999989999


Q ss_pred             -HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             -9999999999798599999876788
Q gi|254781112|r  239 -SINEILCAIHLDGTYKKIFDRYFDK  263 (274)
Q Consensus       239 -~in~~l~~l~~~G~~~~I~~kw~g~  263 (274)
T Consensus       287 ~fInf~~~-----pe~~a~~~~~~~y  307 (363)
T COG0687         287 KFINFLLD-----PEVAAKLAEFVGY  307 (363)
T ss_pred             HHHHHHCC-----HHHHHHHHHHHCC
T ss_conf             99998519-----8999999873267