HHsearch alignment for GI: 254781112 and conserved domain: COG2113
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism].
Probab=92.67 E-value=0.15 Score=29.22 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=72.3
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHC--CCCH
Q ss_conf 78858958999628998724870469984889885216789976299855566898898864310322110000--3675
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNV--AITP 113 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~--~~t~ 113 (274)
T Consensus 26 ~~~~~~tV~~a~-~~W~s-------~~-----~~t~v~~~iLk~~Gy~v~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~ 92 (302)
T COG2113 26 AAEAGKTVRIAD-VGWTS-------GT-----ATTNVAKKILKGLGYTVELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP 92 (302)
T ss_pred CCCCCCEEEEEE-CCCCH-------HH-----HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEECCCCH
T ss_conf 345588258843-69617-------89-----999999999996799624665559999999973797532010268875
Q ss_pred H-----HHHHHCCCCC-CC-CCCCCCCCCCCCC--CCCCCCCC-------CCCCEEEECCCHHH----HHHHCCCC---C
Q ss_conf 6-----7542002333-22-2222222111222--21111123-------34320231010122----33201345---4
Q gi|254781112|r 114 E-----RQKKYDFSIP-YI-AHRVLLVVRSDQQ--DIRSFKDL-------TDKTVAQILGTDLS----RFAKELKS---H 170 (274)
Q Consensus 114 e-----R~~~~~fs~p-~~-~~~~~~~~~~~~~--~~~~~~dL-------~g~~V~~~~g~~~~----~~l~~~~~---~ 170 (274)
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~Ga~~g~~vp~y~~d~~iksi~D~~~~~d~~~g~i~g~~pG~g~~~~~~~~~k~y~~~~~~ 172 (302)
T COG2113 93 DDYKKAVKDKKVELGGTNLEGAKQGWAVPKYVADAGIKSIADLAKFKDKFGGKIYGIEPGWGCMRVIEDAIKAYGLGLKG 172 (302)
T ss_pred HHHHHHHCCCCEEECCCCCCCCEEEEEECEEHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 88998742685441354667724789824003423556565698666877785781589973548999998643655364
Q ss_pred CEEECCHHH
Q ss_conf 213368557
Q gi|254781112|r 171 LVFSHNFEQ 179 (274)
Q Consensus 171 ~~~~~~~~~ 179 (274)
T Consensus 173 ~~lv~~s~~ 181 (302)
T COG2113 173 FELVESSEA 181 (302)
T ss_pred EEEECCCHH
T ss_conf 488447478