HHsearch alignment for GI: 254781112 and conserved domain: COG2113

>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism].
Probab=92.67  E-value=0.15  Score=29.22  Aligned_cols=131  Identities=17%  Similarity=0.136  Sum_probs=72.3

Q ss_pred             HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHC--CCCH
Q ss_conf             78858958999628998724870469984889885216789976299855566898898864310322110000--3675
Q gi|254781112|r   36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNV--AITP  113 (274)
Q Consensus        36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~--~~t~  113 (274)
T Consensus        26 ~~~~~~tV~~a~-~~W~s-------~~-----~~t~v~~~iLk~~Gy~v~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~   92 (302)
T COG2113          26 AAEAGKTVRIAD-VGWTS-------GT-----ATTNVAKKILKGLGYTVELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP   92 (302)
T ss_pred             CCCCCCEEEEEE-CCCCH-------HH-----HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEECCCCH
T ss_conf             345588258843-69617-------89-----999999999996799624665559999999973797532010268875


Q ss_pred             H-----HHHHHCCCCC-CC-CCCCCCCCCCCCC--CCCCCCCC-------CCCCEEEECCCHHH----HHHHCCCC---C
Q ss_conf             6-----7542002333-22-2222222111222--21111123-------34320231010122----33201345---4
Q gi|254781112|r  114 E-----RQKKYDFSIP-YI-AHRVLLVVRSDQQ--DIRSFKDL-------TDKTVAQILGTDLS----RFAKELKS---H  170 (274)
Q Consensus       114 e-----R~~~~~fs~p-~~-~~~~~~~~~~~~~--~~~~~~dL-------~g~~V~~~~g~~~~----~~l~~~~~---~  170 (274)
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~Ga~~g~~vp~y~~d~~iksi~D~~~~~d~~~g~i~g~~pG~g~~~~~~~~~k~y~~~~~~  172 (302)
T COG2113          93 DDYKKAVKDKKVELGGTNLEGAKQGWAVPKYVADAGIKSIADLAKFKDKFGGKIYGIEPGWGCMRVIEDAIKAYGLGLKG  172 (302)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCEEEEEECEEHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             88998742685441354667724789824003423556565698666877785781589973548999998643655364


Q ss_pred             CEEECCHHH
Q ss_conf             213368557
Q gi|254781112|r  171 LVFSHNFEQ  179 (274)
Q Consensus       171 ~~~~~~~~~  179 (274)
T Consensus       173 ~~lv~~s~~  181 (302)
T COG2113         173 FELVESSEA  181 (302)
T ss_pred             EEEECCCHH
T ss_conf             488447478