HHsearch alignment for GI: 254781112 and conserved domain: COG4143
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=94.20 E-value=0.44 Score=26.37 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=102.8
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-H----HHHHHHHHCCCCCCCHHCC-CCH
Q ss_conf 895899962899872487046998488988521678997629985556689-8----8988643103221100003-675
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-V----SGLITGLDTNRYDVLVNVA-ITP 113 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~----~~~~~~l~~g~~D~~~~~~-~t~ 113 (274)
T Consensus 25 t~~LtVytydSF-----~~e------wg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~~~ADvvvGldn~~l 93 (336)
T COG4143 25 TPTLTVYTYDSF-----ASE------WGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKNPKADVVVGLDNNLL 93 (336)
T ss_pred CCEEEEEEEEEE-----ECC------CCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 853899997634-----225------688578999999985952899970758999999997078988858993472778
Q ss_pred HHHHHHCCC----------------------CCCCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC------C--
Q ss_conf 675420023----------------------3322222222211122--22111112334----3202310------1--
Q gi|254781112|r 114 ERQKKYDFS----------------------IPYIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL------G-- 157 (274)
Q Consensus 114 eR~~~~~fs----------------------~p~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~------g-- 157 (274)
T Consensus 94 ~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~~~~ppksL~dL~~~~y~~~ii~qdPrtSspGl~ 173 (336)
T COG4143 94 ARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTKLKNPPKSLKDLVEPEYAGKIIYQDPRTSSPGLG 173 (336)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCHHHHCCCCCCCCEEECCCCCCCCCHH
T ss_conf 88885587666789855788876535675101245412899976577528762689863851269578069887884078
Q ss_pred ---C---HH--H---HHHHCCCCC-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CC--CCCCC
Q ss_conf ---0---12--2---332013454-213368557777554432100366558999999845876673262-36--77687
Q gi|254781112|r 158 ---T---DL--S---RFAKELKSH-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-AD--RMKDN 222 (274)
Q Consensus 158 ---~---~~--~---~~l~~~~~~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 222 (274)
T Consensus 174 fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~-~~~a~~f~eG~ylqi 252 (336)
T COG4143 174 FLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKD-RYAAALFPEGHYLQV 252 (336)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCC-CCCHHCCCCCCEEEE
T ss_conf 8999987636231899999998588686586798898874786557998606822102532002-210011788853677
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHH--HHC-CCCCCCCCCC
Q ss_conf 707999818998999999999999997985999998--767-8887756898
Q gi|254781112|r 223 SAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFD--RYF-DKNIISSVPG 271 (274)
Q Consensus 223 ~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~--kw~-g~d~~~~~~~ 271 (274)
T Consensus 253 Egaa~~k~~knp~LA~~F~~Fm----lS~e~Q~~ip~~nwm~Pa~~~~~Lp~ 300 (336)
T COG4143 253 EGAAVLKGAKNPELADKFLQFM----LSPEFQDAIPTTNWMYPAVKNVPLPA 300 (336)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----HCHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 6653112799879999999997----09877840784543323478986877