HHsearch alignment for GI: 254781112 and conserved domain: COG4143

>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=94.20  E-value=0.44  Score=26.37  Aligned_cols=216  Identities=13%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-H----HHHHHHHHCCCCCCCHHCC-CCH
Q ss_conf             895899962899872487046998488988521678997629985556689-8----8988643103221100003-675
Q gi|254781112|r   40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-V----SGLITGLDTNRYDVLVNVA-ITP  113 (274)
Q Consensus        40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~----~~~~~~l~~g~~D~~~~~~-~t~  113 (274)
T Consensus        25 t~~LtVytydSF-----~~e------wg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~~~ADvvvGldn~~l   93 (336)
T COG4143          25 TPTLTVYTYDSF-----ASE------WGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKNPKADVVVGLDNNLL   93 (336)
T ss_pred             CCEEEEEEEEEE-----ECC------CCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf             853899997634-----225------688578999999985952899970758999999997078988858993472778


Q ss_pred             HHHHHHCCC----------------------CCCCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC------C--
Q ss_conf             675420023----------------------3322222222211122--22111112334----3202310------1--
Q gi|254781112|r  114 ERQKKYDFS----------------------IPYIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL------G--  157 (274)
Q Consensus       114 eR~~~~~fs----------------------~p~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~------g--  157 (274)
T Consensus        94 ~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~~~~ppksL~dL~~~~y~~~ii~qdPrtSspGl~  173 (336)
T COG4143          94 ARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTKLKNPPKSLKDLVEPEYAGKIIYQDPRTSSPGLG  173 (336)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCHHHHCCCCCCCCEEECCCCCCCCCHH
T ss_conf             88885587666789855788876535675101245412899976577528762689863851269578069887884078


Q ss_pred             ---C---HH--H---HHHHCCCCC-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CC--CCCCC
Q ss_conf             ---0---12--2---332013454-213368557777554432100366558999999845876673262-36--77687
Q gi|254781112|r  158 ---T---DL--S---RFAKELKSH-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-AD--RMKDN  222 (274)
Q Consensus       158 ---~---~~--~---~~l~~~~~~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~  222 (274)
T Consensus       174 fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~-~~~a~~f~eG~ylqi  252 (336)
T COG4143         174 FLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKD-RYAAALFPEGHYLQV  252 (336)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCC-CCCHHCCCCCCEEEE
T ss_conf             8999987636231899999998588686586798898874786557998606822102532002-210011788853677


Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHH--HHC-CCCCCCCCCC
Q ss_conf             707999818998999999999999997985999998--767-8887756898
Q gi|254781112|r  223 SAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFD--RYF-DKNIISSVPG  271 (274)
Q Consensus       223 ~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~--kw~-g~d~~~~~~~  271 (274)
T Consensus       253 Egaa~~k~~knp~LA~~F~~Fm----lS~e~Q~~ip~~nwm~Pa~~~~~Lp~  300 (336)
T COG4143         253 EGAAVLKGAKNPELADKFLQFM----LSPEFQDAIPTTNWMYPAVKNVPLPA  300 (336)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH----HCHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf             6653112799879999999997----09877840784543323478986877