HHsearch alignment for GI: 254781112 and conserved domain: PRK04168
>PRK04168 hypothetical protein; Provisional.
Probab=95.63 E-value=0.043 Score=32.59 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=100.1
Q ss_pred HHHHCCCEEEEECCCC-CCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHH--CCCCCCCHHCCC
Q ss_conf 7885895899962899-8724870469984889885216789976-29985556689889886431--032211000036
Q gi|254781112|r 36 RTEDQSALRVGTDGIY-PPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLD--TNRYDVLVNVAI 111 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~-pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~--~g~~D~~~~~~~ 111 (274)
T Consensus 28 ~~~~~~~l~Vf~AGSL~~pf~---------------ei~~~Fe~~~p~v~v~~e~~GS~~~ar~Ite~g~~aDVfaSAD~ 92 (336)
T PRK04168 28 EAEPPGKLKIFHAGSLSVPFE---------------EYEKEFEAYYPNVDVQREAGGSVACVRKITELGKPADILASADY 92 (336)
T ss_pred CCCCCEEEEEEECCCCHHHHH---------------HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 778861599997552589999---------------99999998789965999847389999999957999888998985
Q ss_pred CHHHHH----HHCCCCCCCCCCCCCCCCCCCC---CC--CCCCC-C--CCCCEEE------ECCCH--------------
Q ss_conf 756754----2002333222222222111222---21--11112-3--3432023------10101--------------
Q gi|254781112|r 112 TPERQK----KYDFSIPYIAHRVLLVVRSDQQ---DI--RSFKD-L--TDKTVAQ------ILGTD-------------- 159 (274)
Q Consensus 112 t~eR~~----~~~fs~p~~~~~~~~~~~~~~~---~~--~~~~d-L--~g~~V~~------~~g~~-------------- 159 (274)
T Consensus 93 ~~i~~ll~p~~adw~v~FA~N~lViayt~~Sk~a~ei~~~nWyeiL~~~~Vk~g~sdP~~DP~Gyrt~~~~~LAe~~Y~~ 172 (336)
T PRK04168 93 TLIPKMMIPEYADWYVMFATNEIVLAYTDKSKYADEINSDNWYEILQRPGVKWGFSDPNDDPCGYRSLMVLQLAELYYND 172 (336)
T ss_pred HHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 78788746443341012115538999768882110057331889857798579837998898608999999999986068
Q ss_pred ---HHHHHHCC-------------------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---CCCCCC---
Q ss_conf ---22332013-------------------45421336855777755443210036655899999984---587667---
Q gi|254781112|r 160 ---LSRFAKEL-------------------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLER---RPHDGN--- 211 (274)
Q Consensus 160 ---~~~~l~~~-------------------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~---~~~~~~--- 211 (274)
T Consensus 173 pgl~~~l~~~~~n~~~~~~~i~~p~~~~~n~~k~~~rp~e~~Ll~~lesG~~Dy~f~Y~S~A~q~~L~yv~LP~eINL~~ 252 (336)
T PRK04168 173 PTIYDKLVLKNTNFYVNGTYIRSPKEILVNRPKIFVRPKEVELLGLLETGAMDYLFIYKSVAVQHNLKYIELPDEINLGD 252 (336)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCHHHCCCC
T ss_conf 41788886403553345422356043114554311055267777787558864698762448676997003833314678
Q ss_pred ----------CEEECCC----CCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf ----------3262367----76877079998189--9899999999999999798599999876788877
Q gi|254781112|r 212 ----------LFKIADR----MKDNSAVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 212 ----------~~~~~~~----~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
T Consensus 253 ~~~ad~Y~~vsv~v~~~~~t~~g~PIvY~iTV~~~A~n~e~A~~FV~fll----s~~Gq~il~~-~G~~p~ 318 (336)
T PRK04168 253 YSYADFYKKVSVTLTGKKPTITAKPIVYGITVPKNAPNREAAIEFLKYLL----DEGGPKIFEN-NGQPPI 318 (336)
T ss_pred CCCCCCCCEEEEEECCCCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHH----CCHHHHHHHH-CCCCCC
T ss_conf 11002010589997178751214766898764689999899999999984----8025899997-599987