HHsearch alignment for GI: 254781112 and conserved domain: PRK09861
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional.
Probab=98.23 E-value=1e-05 Score=55.00 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=112.0
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHH-HHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCC-
Q ss_conf 788589589996289987248704699848898852167899-76299855566-8988988643103221100--003-
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVA-HRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVA- 110 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~-~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~- 110 (274)
T Consensus 27 ~~~~~k~ikVG~~~~--p~~~i------------~e~~~~~~~ek~G~~leiv~FsDy~~PN~AL~~G~iDaN~fQH~py 92 (272)
T PRK09861 27 SSSDAKHIKVGVING--AEQDV------------AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPF 92 (272)
T ss_pred CCCCCCEEEEEECCC--CHHHH------------HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 767897389996789--86999------------9999988876179768999946862262897679836024557999
Q ss_pred ---CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC-----------
Q ss_conf ---675675420023--33222222222111222211111233-43202310101-223---3201345-----------
Q gi|254781112|r 111 ---ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS----------- 169 (274)
Q Consensus 111 ---~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~----------- 169 (274)
T Consensus 93 L~~~n~~~--g~~L~~v~~~~~~P~glYS~----K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aGLI~Lk~~~~~~~ 166 (272)
T PRK09861 93 LEQDNQAH--GYKLVAVGNTFVFPMAGYSK----KIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLP 166 (272)
T ss_pred HHHHHHHC--CCCEEEEEEEEEEEEEECCC----CCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 99999986--99579973167830140344----6598758479998980478126999999999889789779999777
Q ss_pred ------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CCCEEECCCCCCCCCEEEEEECCCHH
Q ss_conf ------------4213368557777554432100366558999999845876--67326236776877079998189989
Q gi|254781112|r 170 ------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD--GNLFKIADRMKDNSAVAFMMRKGNNK 235 (274)
Q Consensus 170 ------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~ 235 (274)
T Consensus 167 t~~DI~~NPk~lk~~e~-~aaql~rsl~Dp~vD~avin~n~a----~~agl~p~~dal~~-E~~~~py~niiavr~~~~d 240 (272)
T PRK09861 167 TALDITDNPRHLQIMEL-EGAQLPRVLDDPKVDVAIISTTYI----QQTGLSPVHDSVFI-EDKNSPYVNILVAREDNKN 240 (272)
T ss_pred CHHHHHCCCCCCEEEEC-CHHHHHHHHCCCCCCEEEECHHHH----HHCCCCCCCCCEEE-CCCCCCEEEEEEECCCCCC
T ss_conf 74457608877679982-677746750577616899760579----88777944002036-6899983799998276769
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 999999999999979859999987678887
Q gi|254781112|r 236 LTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 236 L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
T Consensus 241 ~-~~i-k~lv~a~~S~evk~~i~~~y~G~~ 268 (272)
T PRK09861 241 A-ENV-KEFLQSYQSPEVAKAAETIFNGGA 268 (272)
T ss_pred C-HHH-HHHHHHHCCHHHHHHHHHHCCCCE
T ss_conf 9-899-999999779999999998779963