HHsearch alignment for GI: 254781112 and conserved domain: PRK09906
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=90.74 E-value=1.3 Score=23.51 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=93.9
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 88 ~~~~l~ig~~~~~~~-------------~~lp~~l~~f~~~~P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~~~~--~~~ 152 (296)
T PRK09906 88 EDRQLTIGFVPSAEV-------------NLLPKVLPMFRLRHPDTLIELVSLINTQQEEKLRRGELDVGFMRHPV--YSD 152 (296)
T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCC--CCC
T ss_conf 771388321225699-------------99999999987408986348997580899999986997679873688--998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC---CCHH----HHHHHCCCC---CCEEECCHHHHHHH
Q ss_conf 20023332222222221112222----1111123343202310---1012----233201345---42133685577775
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL---GTDL----SRFAKELKS---HLVFSHNFEQSLQL 183 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~---g~~~----~~~l~~~~~---~~~~~~~~~~~~~~ 183 (274)
T Consensus 153 ~l~-~~~l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~ 231 (296)
T PRK09906 153 EID-YLELLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGSLAPIIKAWFAQHNSQPNIVQVATNILVTMNL 231 (296)
T ss_pred CEE-EEEEECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 818-9985046079998289810059998999975998796366547609999999999779997469998989999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf 54432100366558999999845876673262367768770799981899
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 232 v~~G~Gi-~~lP~~~~-----~~~~~~l~~~pl~~~~~~~~~~l~~r~~~ 275 (296)
T PRK09906 232 VGMGLGC-TIIPGYMN-----NFNTGQVVFRPLAGNVPSIALLMAWKKGE 275 (296)
T ss_pred HHHCCEE-EECHHHHH-----HHCCCCEEEEECCCCCCEEEEEEEECCCC
T ss_conf 9949899-98458773-----10689999998899987028999987999