HHsearch alignment for GI: 254781112 and conserved domain: PRK09906

>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=90.74  E-value=1.3  Score=23.51  Aligned_cols=173  Identities=13%  Similarity=0.066  Sum_probs=93.9

Q ss_pred             HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf             589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r   39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK  117 (274)
Q Consensus        39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~  117 (274)
T Consensus        88 ~~~~l~ig~~~~~~~-------------~~lp~~l~~f~~~~P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~~~~--~~~  152 (296)
T PRK09906         88 EDRQLTIGFVPSAEV-------------NLLPKVLPMFRLRHPDTLIELVSLINTQQEEKLRRGELDVGFMRHPV--YSD  152 (296)
T ss_pred             CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCC--CCC
T ss_conf             771388321225699-------------99999999987408986348997580899999986997679873688--998


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC---CCHH----HHHHHCCCC---CCEEECCHHHHHHH
Q ss_conf             20023332222222221112222----1111123343202310---1012----233201345---42133685577775
Q gi|254781112|r  118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL---GTDL----SRFAKELKS---HLVFSHNFEQSLQL  183 (274)
Q Consensus       118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~---g~~~----~~~l~~~~~---~~~~~~~~~~~~~~  183 (274)
T Consensus       153 ~l~-~~~l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~  231 (296)
T PRK09906        153 EID-YLELLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGSLAPIIKAWFAQHNSQPNIVQVATNILVTMNL  231 (296)
T ss_pred             CEE-EEEEECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf             818-9985046079998289810059998999975998796366547609999999999779997469998989999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf             54432100366558999999845876673262367768770799981899
Q gi|254781112|r  184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN  233 (274)
Q Consensus       184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  233 (274)
T Consensus       232 v~~G~Gi-~~lP~~~~-----~~~~~~l~~~pl~~~~~~~~~~l~~r~~~  275 (296)
T PRK09906        232 VGMGLGC-TIIPGYMN-----NFNTGQVVFRPLAGNVPSIALLMAWKKGE  275 (296)
T ss_pred             HHHCCEE-EECHHHHH-----HHCCCCEEEEECCCCCCEEEEEEEECCCC
T ss_conf             9949899-98458773-----10689999998899987028999987999