HHsearch alignment for GI: 254781112 and conserved domain: PRK09986
>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=94.38 E-value=0.29 Score=27.47 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=103.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
T Consensus 79 ~~g~l~Ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~~--~ 143 (278)
T PRK09986 79 EAGRIELGVVGTALW-------------GRMRPAMRHFLKENPNVEVLFREKSPSMQMALLERRELDAGIWRMALEP--N 143 (278)
T ss_pred CCCCEEEEECHHHHH-------------HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCC--C
T ss_conf 777336874216888-------------7642899999987898399999788699999997799758996377778--8
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHH
Q ss_conf 420023332222222221112222----1111123343202310-1012----233201345---421336855777755
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLL 184 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l 184 (274)
T Consensus 144 ~~~~-~~~l~~~~~~~~~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~V 222 (278)
T PRK09986 144 PGFT-SLRLHESAFAVAVPEEHLLASKSSVPLKALRNEYFVTLPSVHSDWGFLQRVCQQAGFSPQIIREVNEPQTVLAMV 222 (278)
T ss_pred CCCE-EEEEEECCCEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 7742-688774163799659873336999999998599979867998669999999997799851799999899999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 443210036655899999984587667326236776877079998189989999999999999
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAI 247 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l 247 (274)
T Consensus 223 ~~G~Gia-ilp~~~~-----~~~~~-~v~~~Pl~~~~~~~~~lv~~~~~~--~p~~~~fi~~l 276 (278)
T PRK09986 223 SMGIGIT-LVADSYA-----QMPWP-GVVFRPLKERIPADLYIVYHQQQA--TPALEKLLAAL 276 (278)
T ss_pred HHCCEEE-EEHHHHH-----CCCCC-CEEEEECCCCCCEEEEEEECCCCC--CHHHHHHHHHH
T ss_conf 9799899-8417774-----23789-999998899980389999849999--99999999986