HHsearch alignment for GI: 254781112 and conserved domain: PRK09986

>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=94.38  E-value=0.29  Score=27.47  Aligned_cols=184  Identities=13%  Similarity=0.125  Sum_probs=103.7

Q ss_pred             HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf             589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r   39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ  116 (274)
Q Consensus        39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~  116 (274)
T Consensus        79 ~~g~l~Ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~~--~  143 (278)
T PRK09986         79 EAGRIELGVVGTALW-------------GRMRPAMRHFLKENPNVEVLFREKSPSMQMALLERRELDAGIWRMALEP--N  143 (278)
T ss_pred             CCCCEEEEECHHHHH-------------HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCC--C
T ss_conf             777336874216888-------------7642899999987898399999788699999997799758996377778--8


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHH
Q ss_conf             420023332222222221112222----1111123343202310-1012----233201345---421336855777755
Q gi|254781112|r  117 KKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLL  184 (274)
Q Consensus       117 ~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l  184 (274)
T Consensus       144 ~~~~-~~~l~~~~~~~~~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~V  222 (278)
T PRK09986        144 PGFT-SLRLHESAFAVAVPEEHLLASKSSVPLKALRNEYFVTLPSVHSDWGFLQRVCQQAGFSPQIIREVNEPQTVLAMV  222 (278)
T ss_pred             CCCE-EEEEEECCCEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf             7742-688774163799659873336999999998599979867998669999999997799851799999899999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             443210036655899999984587667326236776877079998189989999999999999
Q gi|254781112|r  185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAI  247 (274)
Q Consensus       185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l  247 (274)
T Consensus       223 ~~G~Gia-ilp~~~~-----~~~~~-~v~~~Pl~~~~~~~~~lv~~~~~~--~p~~~~fi~~l  276 (278)
T PRK09986        223 SMGIGIT-LVADSYA-----QMPWP-GVVFRPLKERIPADLYIVYHQQQA--TPALEKLLAAL  276 (278)
T ss_pred             HHCCEEE-EEHHHHH-----CCCCC-CEEEEECCCCCCEEEEEEECCCCC--CHHHHHHHHHH
T ss_conf             9799899-8417774-----23789-999998899980389999849999--99999999986