HHsearch alignment for GI: 254781112 and conserved domain: PRK11013
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional.
Probab=93.42 E-value=0.61 Score=25.49 Aligned_cols=173 Identities=9% Similarity=0.080 Sum_probs=94.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 92 ~~G~lri~~~~~~~~-------------~~lp~~l~~f~~~~P~v~v~i~~~~~~~~~~~l~~~~~Dl~l~~~~~~~--~ 156 (309)
T PRK11013 92 RQGQLSIACLPVFSQ-------------SLLPGLCQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTP--A 156 (309)
T ss_pred CCCCCCCCCCHHHHH-------------HHCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCC--C
T ss_conf 367656530067898-------------8665231567843898079999898599999997599778996078899--8
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-1010122----33201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
T Consensus 157 ~~-~~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~e~~~~~~~~~lV~ 235 (309)
T PRK11013 157 GT-ERTELLTLDEVCVLPDGHPLAAKKVLTPDDFQGENFISLSRTDSYRQLLDQLFAEHGVKRRMVVETHSAASVCAMVR 235 (309)
T ss_pred CC-EEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 75-78886420146754789800049999999973898696389994999999999976999776999896999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf 432100366558999999845876673262367768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 236 ~G~Gv-ail~~~~~~~~~~~----g~~~~-pl~~~~~~~~~lv~~~~r 277 (309)
T PRK11013 236 AGLGV-SIVNPLTALDYAGS----GLVVR-PFSISVPFTVSLIRPLHR 277 (309)
T ss_pred HCCEE-EEECHHHHHHHHHC----CEEEE-ECCCCCCEEEEEEEECCC
T ss_conf 79969-99469999866219----90999-888899618999998999