HHsearch alignment for GI: 254781112 and conserved domain: PRK11063
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional.
Probab=98.20 E-value=2e-05 Score=53.19 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=107.6
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHH-HHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCC--
Q ss_conf 88589589996289987248704699848898852167899-76299855566-8988988643103221100--003--
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVA-HRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVA-- 110 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~-~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~-- 110 (274)
T Consensus 27 ~~~~~~ikVG~~~g--p~~ei------------~e~~~~~~~ek~G~~veiv~FsDy~~pN~AL~~G~iDaN~fQH~~yL 92 (271)
T PRK11063 27 EKDPNHIKVGVIVG--AEQQV------------AEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYL 92 (271)
T ss_pred CCCCCEEEEEECCC--CHHHH------------HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHCHHHH
T ss_conf 56798189984689--87999------------99988888860797689999368321558986798442345579999
Q ss_pred --CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC------------
Q ss_conf --675675420023--33222222222111222211111233-43202310101-223---3201345------------
Q gi|254781112|r 111 --ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS------------ 169 (274)
Q Consensus 111 --~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~------------ 169 (274)
T Consensus 93 ~~~nk~~--g~~L~~v~~~~~~P~glYS----~K~ksl~elp~Ga~IaIPND~sN~~RAL~lL~~aGLIkLk~~~~~~~T 166 (271)
T PRK11063 93 DQQIKDR--GYKLVAVGNTFVYPIAGYS----KKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPT 166 (271)
T ss_pred HHHHHHC--CCCEEEEEEEEEEEEEEEE----CCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 9999977--9957998667784158642----365886475699999804885609999999998898897799998789
Q ss_pred -----------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC--CCEEECCCCCCCCCEEEEEECCCHHH
Q ss_conf -----------42133685577775544321003665589999998458766--73262367768770799981899899
Q gi|254781112|r 170 -----------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDG--NLFKIADRMKDNSAVAFMMRKGNNKL 236 (274)
Q Consensus 170 -----------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~L 236 (274)
T Consensus 167 ~~DI~~Npk~l~~~e~-daaql~rsl~D~dv~~aviN~~~----a~~agl~p~kdal~~-E~~~~py~Nvivvr~~~kd- 239 (271)
T PRK11063 167 VLDIVENPKNLKIVEL-EAPQLPRSLDDAQIALAVINTTY----ASQIGLTPAKDGIFV-EDKDSPYVNLIVAREDNKD- 239 (271)
T ss_pred HHHHHCCCCCCEEEEC-CHHHHHHHCCCCCEEEEEECHHH----HHHCCCCCCCCCEEE-CCCCCCEEEEEEECCCCCC-
T ss_conf 6688548877489990-37764431357651089814778----977798934250477-7899983899998277779-
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 999999999999798599999876788
Q gi|254781112|r 237 TRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 237 ~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
T Consensus 240 -~~~ik~lv~~~~S~evk~~I~~~~~G 265 (271)
T PRK11063 240 -AENVKKFVQAYQSDEVYEAANKVFNG 265 (271)
T ss_pred -CHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf -98999999997799999999987799