HHsearch alignment for GI: 254781112 and conserved domain: PRK11119
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional.
Probab=94.50 E-value=0.096 Score=30.48 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCC-CCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 8958999628998724870469984889885216789976299855-566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVE-FFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~-~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
T Consensus 29 g~tV~~a~~-~W~~---------~---~a~t~v~~~~Le~lGY~Ve~~~~~~~~~~~~ala~GdiD~~~~~-WlP~~~~~ 94 (332)
T PRK11119 29 GITVQPAQS-TIAE---------E---TFQTLLVSRALEKLGYDVNKPKEVDYNVFYTSIASGDATFTAVN-WFPLHDDQ 94 (332)
T ss_pred CCEEEEEEC-CCHH---------H---HHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCCEEEECC-CCCCCHHH
T ss_conf 977876016-8408---------9---99999999999986998542014446889999855884486556-17651799
Q ss_pred H---------CCCCCCCCC-CCCCCCCC---CCCCCCCCCCCCC-------------C--CEEEECCCHHH----HHHHC
Q ss_conf 0---------023332222-22222111---2222111112334-------------3--20231010122----33201
Q gi|254781112|r 119 Y---------DFSIPYIAH-RVLLVVRS---DQQDIRSFKDLTD-------------K--TVAQILGTDLS----RFAKE 166 (274)
Q Consensus 119 ~---------~fs~p~~~~-~~~~~~~~---~~~~~~~~~dL~g-------------~--~V~~~~g~~~~----~~l~~ 166 (274)
T Consensus 95 ~~~~~~~~~~~~~g~~~~ga~~G~~V~~~~~d~~~I~si~dLkdp~~a~~Fd~~~~GKg~i~g~~pGwg~~~~~~~~i~~ 174 (332)
T PRK11119 95 YEAAGGDKKFYREGVIVGGAAQGYLIDKKTADKYNITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEAVINHQLKA 174 (332)
T ss_pred HHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99732776476424335665136895023321148578998628678986076778850288148872066899999986
Q ss_pred CCC
Q ss_conf 345
Q gi|254781112|r 167 LKS 169 (274)
Q Consensus 167 ~~~ 169 (274)
T Consensus 175 ygL 177 (332)
T PRK11119 175 YGL 177 (332)
T ss_pred CCC
T ss_conf 799