HHsearch alignment for GI: 254781112 and conserved domain: PRK11151
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional.
Probab=96.84 E-value=0.014 Score=35.56 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=106.8
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
T Consensus 90 ~G~lrig~~~~~~~~-------------llp~~l~~f~~~~P~v~i~l~~~~~~~l~~~l~~g~~D~~i~~~~-~~~-~~ 154 (305)
T PRK11151 90 SGPLHIGLIPTVGPY-------------LLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALV-KES-EA 154 (305)
T ss_pred CCEEEEEEHHHHHHH-------------CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEECC-CCC-CC
T ss_conf 641431102223332-------------382779998623898379999887577787865788537998458-899-87
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEE-CCCHHH----HHHHCCC---CCCEEECCHHHHHHHHHH
Q ss_conf 0023332222222221112222----111112334320231-010122----3320134---542133685577775544
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQI-LGTDLS----RFAKELK---SHLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~-~g~~~~----~~l~~~~---~~~~~~~~~~~~~~~l~~ 186 (274)
T Consensus 155 ~~-~~~l~~e~l~lv~~~~hpla~~~~i~l~~L~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~i~~lV~~ 233 (305)
T PRK11151 155 FI-EVPLFDEPMLLAVYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAA 233 (305)
T ss_pred CE-EEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 26-87620462799995898433699989999769988996899859999999999779998738999447999999992
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 32100366558999999845876673262-3677687707999818998999999999999997
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHL 249 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~ 249 (274)
T Consensus 234 G~Gv-~ilp~~~v~~~~~----~~~l~~~pl~~~~~~r~i~lv~r~~~~-ls~~~~~~~e~ir~ 291 (305)
T PRK11151 234 GSGI-TLLPALAVPNERK----RDGVCYLPCIKPEPRRTIGLVYRPGSP-LRSRYEQLAEAIRA 291 (305)
T ss_pred CCCE-EECCHHHHHHHCC----CCCEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHH
T ss_conf 9968-9835999862212----698899988899973699999989098-78999999999999