HHsearch alignment for GI: 254781112 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=96.84 E-value=0.0094 Score=36.69 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=102.9
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 89 ~~G~l~ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~--~~~~~ 153 (292)
T PRK11242 89 SRGSLRLAMTPTFTA-------------YLIGPLIDAFHARYPGITLTIREMPQERIEALLADDELDVGIAFA--PVHSP 153 (292)
T ss_pred CCCEEEEECHHHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEC--CCCCC
T ss_conf 776586302457788-------------873899888886488973489976889999998679855799836--88887
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECC-CHH----HHHHHCCCCC---CEEECCHHHHHHHH
Q ss_conf 20023332222222221112222-----11111233432023101-012----2332013454---21336855777755
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQILG-TDL----SRFAKELKSH---LVFSHNFEQSLQLL 184 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~~~g-~~~----~~~l~~~~~~---~~~~~~~~~~~~~l 184 (274)
T Consensus 154 ~l-~~~~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~V 232 (292)
T PRK11242 154 EI-EAQPLFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYFRRHGITPRVAIEANSISAVLEIV 232 (292)
T ss_pred CC-EEEEECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 72-56542045079999089804227999999998189989967998579999999997699985367538899999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 4432100366558999999845876673262-367768770799981899
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 233 ~~g~Gi-~ilP~~~~----~~~~---~l~~i~l~~~~~~r~i~lv~~k~~ 274 (292)
T PRK11242 233 RRGRLA-TLLPAAIA----REHD---DLCAVALDPPLPQRTAALLRRKGA 274 (292)
T ss_pred HHCCEE-EEEHHHHH----HHCC---CEEEEECCCCCCEEEEEEEEECCC
T ss_conf 979969-97028986----0089---989998989987039999998939