HHsearch alignment for GI: 254781112 and conserved domain: PRK12680
>PRK12680 transcriptional regulator CysB-like protein; Reviewed.
Probab=95.81 E-value=0.15 Score=29.26 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=120.3
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
T Consensus 91 ~~G~L~Ig~~~t~a~~-------------~LP~vi~~f~~~yP~V~l~l~~~~~~~l~e~l~~g~~Diai~~~~~~~~-- 155 (327)
T PRK12680 91 SQGQLTLTTTHTQARF-------------VLPPAVAQIKQAYPQVSVHLQQAAESAALDLLGQGDADIAVVSTAGGEP-- 155 (327)
T ss_pred CCEEEEEEEECHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCC--
T ss_conf 7337999984227777-------------5689999999868996799998982889999978994099944777799--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--CC-EEECCHHHHHHH
Q ss_conf 420023332222222221112222-----11111233432023-101012----233201345--42-133685577775
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--HL-VFSHNFEQSLQL 183 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~~-~~~~~~~~~~~~ 183 (274)
T Consensus 156 -~~~~~~pl~~~~~~vvvP~~HpL~~~~~~i~L~~La~~plI~~~~g~~~r~~id~af~~~Gl~P~iv~ea~~~d~Ik~~ 234 (327)
T PRK12680 156 -SAGIAVPLYRWRRLVVVPRGHALDTPRTAPDMAALAEHPLISYDSSTRPGSSLQRAFAQVGLEPSIALTALDADLIKTY 234 (327)
T ss_pred -CCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf -7654767522357999978981005899999999808988963899867999999999779976479999959999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 54432100366558999999845876673262-36776877079998189989999999999999979859999987678
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
T Consensus 235 V~~GlGV-~Ivp~mA~-----~-~~d~~l~~~~~~~l~~~~~~~~~~~~~~~-lr~~~~~fi~~~~p~-l~~~~~~~~~~ 305 (327)
T PRK12680 235 VRAGLGV-GLVAEMAV-----N-AFDEDLRAWPAPAPIAECIAWAVLPRDRV-LRDYALDLVHVLAPQ-IDKRDLRRVLD 305 (327)
T ss_pred HHHCCEE-EECHHHHH-----C-CCCCCEEEEECCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHCCC-CCHHHHHHHHC
T ss_conf 9949861-88164762-----8-76898389406457775605999978846-899999999986688-89999999826
Q ss_pred CC
Q ss_conf 88
Q gi|254781112|r 263 KN 264 (274)
Q Consensus 263 ~d 264 (274)
T Consensus 306 ~~ 307 (327)
T PRK12680 306 GN 307 (327)
T ss_pred CC
T ss_conf 88