HHsearch alignment for GI: 254781112 and conserved domain: PRK12681
>PRK12681 cysB transcriptional regulator CysB; Reviewed.
Probab=96.16 E-value=0.067 Score=31.44 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=103.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 91 ~~G~L~Ia~~~t~a~~-------------~LP~~i~~F~~~~P~v~l~l~~~~~~~i~~~l~~g~~DlaI~~e-~~~~~~ 156 (324)
T PRK12681 91 DKGSLYIATTHTQARY-------------ALPPVIKGFIKRYPRVSLHMHQGSPTQIAEAAAKGEADFAIATE-ALHLYD 156 (324)
T ss_pred CCCEEEEEECHHHHHH-------------HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCCC
T ss_conf 7634999853588887-------------72599999998789984465317879999999879987231246-666688
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--C-CEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-101012----233201345--4-213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--H-LVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~-~~~~~~~~~~~~~l~ 185 (274)
T Consensus 157 d-l~~~P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R~~id~~f~~~g~~P~iv~e~~~~~~I~~~V~ 235 (324)
T PRK12681 157 D-LIMLPCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235 (324)
T ss_pred C-CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7-468640003222457999965579999999986998596149982999999999988997607999898999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 432100366558999999845876673262-367768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 236 ~GlGV~-ilp~mA~-----~~~~d~~l~~~~~~~~f~~~~t~i~~r~g~ 278 (324)
T PRK12681 236 LGLGVG-VIASMAV-----DPVADPDLVAIDASHLFAHSTTKIGFRRGT 278 (324)
T ss_pred HCCEEE-ECHHHHC-----CCCCCCCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 599139-7035551-----965578817843655677764799997997