HHsearch alignment for GI: 254781112 and conserved domain: TIGR00787
>TIGR00787 dctP TRAP transporter solute receptor, DctP family; InterPro: IPR004682 TRAP-T family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-positive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterised. This system is the DctPQM system of Rhodobacter capsulatus. DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterised.; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=94.28 E-value=0.045 Score=32.50 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 32222222221112222111112334320231010122332013454213368557777554432100366558999999
Q gi|254781112|r 124 PYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274)
Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274)
T Consensus 118 ~~w~nG~R~~t~~~-~p~~~p~D~kGLKiRi~~s~~~~~~~~~lGA~P~~~~-F~EvY~ALq~gvVDg--qENP~s~~~s 193 (267)
T TIGR00787 118 AYWDNGFRQFTSSK-KPVTKPEDLKGLKIRIPASPVLEAQFKALGANPEPMA-FSEVYTALQTGVVDG--QENPLSNIYS 193 (267)
T ss_pred HHHHCCHHHHHCCC-CCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCC--CCCCHHHHHH
T ss_conf 33233145422143-4124603325874025986899999997089984126-589999875481010--0467277621
Q ss_pred HHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 84587667326236776877079998189-----98999999999999997985999
Q gi|254781112|r 204 ERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIHLDGTYKK 255 (274)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~~~G~~~~ 255 (274)
T Consensus 194 ~KlYEVqKyL~~t--nH~y~g~~v~~n~~~w~~L~~dl~~~~~~A~---~ea~~~~~ 245 (267)
T TIGR00787 194 SKLYEVQKYLSLT--NHGYLGYLVVVNKAFWKSLPPDLQAVVKEAA---KEATEYQR 245 (267)
T ss_pred HHHHHHHHHHHHH--HHHHCCCCEEEEHHHHHCCCHHHHHHHHHHH---HHHHHHHH
T ss_conf 0212364345331--0303262027503674318788999999999---99999888