HHsearch alignment for GI: 254781112 and conserved domain: TIGR03339

>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=92.74  E-value=0.77  Score=24.87  Aligned_cols=175  Identities=12%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf             8958999628998724870469984889885216789976-299855566898898864310322110000367567542
Q gi|254781112|r   40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK  118 (274)
Q Consensus        40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~  118 (274)
T Consensus        86 ~g~l~ig~~~---~~-~------------l~~~l~~f~~~~P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~~~~--~~~~  147 (279)
T TIGR03339        86 EGSLRIAATA---PY-Y------------VLDLVARFRQRYPGIEVSVRIGNSQEVLQALQSYRVDVAVSSEVV--DDPR  147 (279)
T ss_pred             CCEEEECCCH---HH-H------------HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCC--CCCC
T ss_conf             4516861751---77-8------------999999999858986057895580877754025965899972788--9998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---CCEEECCHHHHHHHHHH
Q ss_conf             0023332222222221112222----11111233432023-1010122----33201345---42133685577775544
Q gi|254781112|r  119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---HLVFSHNFEQSLQLLLS  186 (274)
Q Consensus       119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~~  186 (274)
T Consensus       148 ~-~~~~l~~~~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  226 (279)
T TIGR03339       148 L-DRVVLGNDPLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTRQTTEEALAAAGVAPRPALEIGSREAIREAVLA  226 (279)
T ss_pred             E-EEEEEECCCEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
T ss_conf             3-999940444899991886332399999999769998982899839999999999779987536778969999999997


Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC---CHHHHHHH
Q ss_conf             3210036655899999984587667326236776877079998189---98999999
Q gi|254781112|r  187 KRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG---NNKLTRSI  240 (274)
Q Consensus       187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~~L~~~i  240 (274)
T Consensus       227 G~Gia-ilP~~~v----~~~~~-l~~~p-l~~~~~~~~~~l~~~~~r~~sp~~~aFi  276 (279)
T TIGR03339       227 GLGVS-VVSAAEV----GRDPR-LRVLP-IVGAEPTMDEYLYCLKERRGARLIAAFL  276 (279)
T ss_pred             CCEEE-EEEHHHH----HHCCC-EEEEE-CCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf             99389-7148996----10989-89998-9888986279999989986899999999