HHsearch alignment for GI: 254781112 and conserved domain: TIGR03339
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=92.74 E-value=0.77 Score=24.87 Aligned_cols=175 Identities=12% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 8958999628998724870469984889885216789976-299855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
T Consensus 86 ~g~l~ig~~~---~~-~------------l~~~l~~f~~~~P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~~~~--~~~~ 147 (279)
T TIGR03339 86 EGSLRIAATA---PY-Y------------VLDLVARFRQRYPGIEVSVRIGNSQEVLQALQSYRVDVAVSSEVV--DDPR 147 (279)
T ss_pred CCEEEECCCH---HH-H------------HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCC--CCCC
T ss_conf 4516861751---77-8------------999999999858986057895580877754025965899972788--9998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---CCEEECCHHHHHHHHHH
Q ss_conf 0023332222222221112222----11111233432023-1010122----33201345---42133685577775544
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---HLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274)
T Consensus 148 ~-~~~~l~~~~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 226 (279)
T TIGR03339 148 L-DRVVLGNDPLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTRQTTEEALAAAGVAPRPALEIGSREAIREAVLA 226 (279)
T ss_pred E-EEEEEECCCEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 3-999940444899991886332399999999769998982899839999999999779987536778969999999997
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC---CHHHHHHH
Q ss_conf 3210036655899999984587667326236776877079998189---98999999
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG---NNKLTRSI 240 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~~L~~~i 240 (274)
T Consensus 227 G~Gia-ilP~~~v----~~~~~-l~~~p-l~~~~~~~~~~l~~~~~r~~sp~~~aFi 276 (279)
T TIGR03339 227 GLGVS-VVSAAEV----GRDPR-LRVLP-IVGAEPTMDEYLYCLKERRGARLIAAFL 276 (279)
T ss_pred CCEEE-EEEHHHH----HHCCC-EEEEE-CCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 99389-7148996----10989-89998-9888986279999989986899999999