>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.

Probab=98.92 E-value=7.1e-09 Score=74.56 Aligned_cols=209 Identities=11% Similarity=0.140 Sum_probs=130.8 Q ss_pred CCCEEEEEC--CCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCC---CCH Q ss_conf 895899962--89987248704699848898852167899762998555668-988988643103221100003---675 Q gi|254781112|r 40 QSALRVGTD--GIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVA---ITP 113 (274) Q Consensus 40 ~~~l~v~~~--~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~---~t~ 113 (274) T Consensus 1 k~~~kig~S~w~Gw~Pw~~A--~e~----G----ifkKw~~k~Gi~Vel~~f~dy~~si~a~~AG~~Dg~~~Tn~Dal~i 70 (328) T TIGR03427 1 KDKFKVCWSIYAGWMPWGYA--AQQ----G----IVDKWADKYGITIEVVQINDYVESINQYTAGKFDGCTMTNMDALTI 70 (328) T ss_pred CCCEEEEEECCCCHHHHHHH--HHC----C----CHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHH T ss_conf 99339997268538889999--974----9----2655588759737999828848889999758977477626156651 Q ss_pred HHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH----HHCCCC---CCEEE-CCHHHHH Q ss_conf 67542002----333222222222111222211111233432023101012233----201345---42133-6855777 Q gi|254781112|r 114 ERQKKYDF----SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRF----AKELKS---HLVFS-HNFEQSL 181 (274) Q Consensus 114 eR~~~~~f----s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~----l~~~~~---~~~~~-~~~~~~~ 181 (274) T Consensus 71 ~aa~Gvd~~~vlv~D~SnG~D~Ivak-~---~~slaDLKGKkVav~~~svshyLL~rALe~aGLs~~DV~vVn~~~~d~~ 146 (328) T TIGR03427 71 PAAGGVDTTALIVGDFSNGNDGIVLK-G---GKSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDADIV 146 (328) T ss_pred HHCCCCCEEEEEEECCCCCCCEEEEC-C---CCCHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCHHHH T ss_conf 31179972899985257887479978-9---9887884898883247870799999999986998899078847954699 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC----CCHH----HHHHHHHHHHHHHHCCH- Q ss_conf 75544321003665589999998458766732623677687707999818----9989----99999999999997985- Q gi|254781112|r 182 QLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK----GNNK----LTRSINEILCAIHLDGT- 252 (274) Q Consensus 182 ~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~~----L~~~in~~l~~l~~~G~- 252 (274) T Consensus 147 aAf~sg~VdA~vTWeP~ls~-i~~~~ga~~iF~Ss~iPGeI~D~-lvV~~~~L~~nP~~~kAlv~aW~e~~~~m~~~~~~ 224 (328) T TIGR03427 147 AAFITKDVTAVVTWNPQLSE-IKAQPGANEVFDSSQIPGEILDL-MVVNTQTLKANPNLGKALTGAWYETMALMSAGDAA 224 (328) T ss_pred HHHHCCCCCEEEEECHHHHH-HHHCCCCCEEEECCCCCCCEEEE-EEECHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99747998789997856899-97289982644257788840379-99858988879999999999999999998649812 Q ss_pred ---HHHHHHHHCCCC Q ss_conf ---999998767888 Q gi|254781112|r 253 ---YKKIFDRYFDKN 264 (274) Q Consensus 253 ---~~~I~~kw~g~d 264 (274) T Consensus 225 ~~~a~~~ma~~~G~d 239 (328) T TIGR03427 225 GKAALEAMAKASGTD 239 (328) T ss_pred HHHHHHHHHHHHCCC T ss_conf 799999999874999

HHsearch alignment for GI: 254781112 and conserved domain: TIGR03427