HHsearch alignment for GI: 254781112 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.52 E-value=1.8e-13 Score=103.06 Aligned_cols=207 Identities=18% Similarity=0.237 Sum_probs=132.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-H-CCCCHHHH
Q ss_conf 8958999628998724870469984889885216789976299855566-8988988643103221100-0-03675675
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-N-VAITPERQ 116 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~-~~~t~eR~ 116 (274)
T Consensus 26 p~~l~~gv~P~~~~~~~~~-----~~----~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~- 95 (288)
T TIGR03431 26 PKELNFGIIPTENASDLKQ-----RW----EPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGKVDIAWYGPSSYAEAY- 95 (288)
T ss_pred CCEEEEEEECCCCHHHHHH-----HH----HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHH-
T ss_conf 8368999806999999999-----99----9999999998789789996899999999998598309998847889986-
Q ss_pred HHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-----CCHHH-HHH-HCCCC-------CCEE
Q ss_conf 4200233322---------222222211122221111123343202310-----10122-332-01345-------4213
Q gi|254781112|r 117 KKYDFSIPYI---------AHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-----GTDLS-RFA-KELKS-------HLVF 173 (274)
Q Consensus 117 ~~~~fs~p~~---------~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l-~~~~~-------~~~~ 173 (274)
T Consensus 96 ~~~~-~~~la~~~~~~g~~~y~s~iivr~Ds-~i~sl~DLkGk~iaf~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~ 173 (288)
T TIGR03431 96 QKAN-AEAFAIEVNADGSTGYYSVLIVKKDS-PIKSLEDLKGKTFGFVDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTF 173 (288)
T ss_pred HCCC-CEEEEEEECCCCCCCEEEEEEEECCC-CCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEE
T ss_conf 5259-74889985158886457999998999-888778957987660287411113999999998659972545531331
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 368557777554432100366558999999845-87667326236--776877079998189-98999999999999997
Q gi|254781112|r 174 SHNFEQSLQLLLSKRTDATMIPDIPFFNFLERR-PHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 174 ~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
T Consensus 174 ~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S~~iP~~--~~~v~~~l~~~~~~~i~~all~l~~ 251 (288)
T TIGR03431 174 SGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPLIPNG--PIVYRKDLPADLKAKIRKAFLNYHK 251 (288)
T ss_pred CCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCC--CEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 57878999999859932998338889999974796303136999867888877--1899699999999999999980786
Q ss_pred CCHH-HHHHHHH
Q ss_conf 9859-9999876
Q gi|254781112|r 250 DGTY-KKIFDRY 260 (274)
Q Consensus 250 ~G~~-~~I~~kw 260 (274)
T Consensus 252 ~d~~~~~~l~~~ 263 (288)
T TIGR03431 252 TDKACFEKIAGG 263 (288)
T ss_pred CCHHHHHHHHCC
T ss_conf 787689987425