HHsearch alignment for GI: 254781112 and conserved domain: TIGR03431

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.52  E-value=1.8e-13  Score=103.06  Aligned_cols=207  Identities=18%  Similarity=0.237  Sum_probs=132.5

Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-H-CCCCHHHH
Q ss_conf             8958999628998724870469984889885216789976299855566-8988988643103221100-0-03675675
Q gi|254781112|r   40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-N-VAITPERQ  116 (274)
Q Consensus        40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~-~~~t~eR~  116 (274)
T Consensus        26 p~~l~~gv~P~~~~~~~~~-----~~----~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~-   95 (288)
T TIGR03431        26 PKELNFGIIPTENASDLKQ-----RW----EPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGKVDIAWYGPSSYAEAY-   95 (288)
T ss_pred             CCEEEEEEECCCCHHHHHH-----HH----HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHH-
T ss_conf             8368999806999999999-----99----9999999998789789996899999999998598309998847889986-


Q ss_pred             HHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-----CCHHH-HHH-HCCCC-------CCEE
Q ss_conf             4200233322---------222222211122221111123343202310-----10122-332-01345-------4213
Q gi|254781112|r  117 KKYDFSIPYI---------AHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-----GTDLS-RFA-KELKS-------HLVF  173 (274)
Q Consensus       117 ~~~~fs~p~~---------~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l-~~~~~-------~~~~  173 (274)
T Consensus        96 ~~~~-~~~la~~~~~~g~~~y~s~iivr~Ds-~i~sl~DLkGk~iaf~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~  173 (288)
T TIGR03431        96 QKAN-AEAFAIEVNADGSTGYYSVLIVKKDS-PIKSLEDLKGKTFGFVDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTF  173 (288)
T ss_pred             HCCC-CEEEEEEECCCCCCCEEEEEEEECCC-CCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEE
T ss_conf             5259-74889985158886457999998999-888778957987660287411113999999998659972545531331


Q ss_pred             ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf             368557777554432100366558999999845-87667326236--776877079998189-98999999999999997
Q gi|254781112|r  174 SHNFEQSLQLLLSKRTDATMIPDIPFFNFLERR-PHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHL  249 (274)
Q Consensus       174 ~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~  249 (274)
T Consensus       174 ~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S~~iP~~--~~~v~~~l~~~~~~~i~~all~l~~  251 (288)
T TIGR03431       174 SGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPLIPNG--PIVYRKDLPADLKAKIRKAFLNYHK  251 (288)
T ss_pred             CCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCC--CEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             57878999999859932998338889999974796303136999867888877--1899699999999999999980786


Q ss_pred             CCHH-HHHHHHH
Q ss_conf             9859-9999876
Q gi|254781112|r  250 DGTY-KKIFDRY  260 (274)
Q Consensus       250 ~G~~-~~I~~kw  260 (274)
T Consensus       252 ~d~~~~~~l~~~  263 (288)
T TIGR03431       252 TDKACFEKIAGG  263 (288)
T ss_pred             CCHHHHHHHHCC
T ss_conf             787689987425