HHsearch alignment for GI: 254781112 and conserved domain: pfam00060

>pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.

Probab=99.18  E-value=1.9e-10  Score=84.36  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CCCCCCCCCCCCCCCCC---CEEEECCCHHHHHHHCCCC--------------CCEEECCHHHHHHHHHHHH-HHCCCCC
Q ss_conf             11122221111123343---2023101012233201345--------------4213368557777554432-1003665
Q gi|254781112|r  134 VRSDQQDIRSFKDLTDK---TVAQILGTDLSRFAKELKS--------------HLVFSHNFEQSLQLLLSKR-TDATMIP  195 (274)
Q Consensus       134 ~~~~~~~~~~~~dL~g~---~V~~~~g~~~~~~l~~~~~--------------~~~~~~~~~~~~~~l~~gr-vD~~~~~  195 (274)
T Consensus        95 ~~~~~~~I~~i~dL~~~~~~~~g~~~~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~~~A~i~e  174 (270)
T pfam00060        95 VERMQSPIQSLEDLAKQNKIGYGTLRGGSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLME  174 (270)
T ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             13347775789999867987311140761677778614306889999987506667778999999998658862899952


Q ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             58999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r  196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK  263 (274)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~  263 (274)
T Consensus       175 ~~~l~~~~~~~~c---~l~~vg~~f~~~~~g~a~~k~Sp-~~~~~s~~il~l~E~G~l~~l~~kW~~~  238 (270)
T pfam00060       175 SAYLEYEVARDCC---KLTTVGEVFGTKGYGIAFPKGSP-LRDKLSRAILELRESGELQKLENKWWKK  238 (270)
T ss_pred             HHHHHHHHHHCCC---CCEEECCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             5889999970487---62780531145754688518993-0999999999987267899999864589