HHsearch alignment for GI: 254781112 and conserved domain: pfam03401
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=97.31 E-value=0.0012 Score=42.19 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-------C-CCEEEE-CCCHHH----HHHHCCCC--CCEEECCHHHHHHHHHHH
Q ss_conf 33222222222111222211111233-------4-320231-010122----33201345--421336855777755443
Q gi|254781112|r 123 IPYIAHRVLLVVRSDQQDIRSFKDLT-------D-KTVAQI-LGTDLS----RFAKELKS--HLVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 123 ~p~~~~~~~~~~~~~~~~~~~~~dL~-------g-~~V~~~-~g~~~~----~~l~~~~~--~~~~~~~~~~~~~~l~~g 187 (274)
T Consensus 73 a~~~~~~~~l~v~~dsp-~~t~~dli~~ak~~Pg~~~~g~~G~gs~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG 151 (274)
T pfam03401 73 SLLATSPMVLVVPADSP-FKTLQELVAYAKANPGKLTFASAGIGTSNHLAGELLASKAGVQLSHVPYKGSSPALQDLLGG 151 (274)
T ss_pred HHHHCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 86501635889779997-56899999999848996587327888631899999999709964883467832668998678
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCC------------EEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 2100366558999999845876673------------262367-----76877079998189-98999999999999997
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNL------------FKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
T Consensus 152 ~vd~~~~~~~~~~~~v~~G~lr~Lav~~~~R~~~~PdVPT~~E~G~~~~~~~~w~g~~ap~gtP~~~~~~l~~a~~~~~~ 231 (274)
T pfam03401 152 RVDMMIDSLTSTAPYIKAGKLRALAVTSPKRSPQLPDVPTVAELGLKGFEAGVWFGLVAPKGTPPAVVEKLNDAIKKALK 231 (274)
T ss_pred EEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 44599835132044541798259999757567544899976884878714788888763498899999999999999974
Q ss_pred CCHHHHHHHHHCCCCC
Q ss_conf 9859999987678887
Q gi|254781112|r 250 DGTYKKIFDRYFDKNI 265 (274)
Q Consensus 250 ~G~~~~I~~kw~g~d~ 265 (274)
T Consensus 232 dpe~~~~~~~-~g~~~ 246 (274)
T pfam03401 232 DPEVVERLAN-LGMEP 246 (274)
T ss_pred CHHHHHHHHH-CCCCC
T ss_conf 9999999997-78957