HHsearch alignment for GI: 254781112 and conserved domain: smart00062
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=100.00 E-value=3.9e-41 Score=274.07 Aligned_cols=216 Identities=38% Similarity=0.627 Sum_probs=195.9
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHC
Q ss_conf 589996289987248704699848898852167899762998555668988988643103221100-0036756754200
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYD 120 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~ 120 (274)
T Consensus 1 ~i~v~~~~~~pP~~~~--~~~G~~~G~~~Dil~~~~~~lg~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~~~~ 78 (219)
T smart00062 1 TLRVGTNGDYPPFSFA--DEDGELTGFDVDLAKAIAKELGLKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAKQVD 78 (219)
T ss_pred CEEEEECCCCCCEEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCC
T ss_conf 9899978998992799--99997788299999999999799679998478999999975897705311357867750022
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 23332222222221112222111112334320231010122332013--4542133685577775544321003665589
Q gi|254781112|r 121 FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIP 198 (274)
Q Consensus 121 fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~ 198 (274)
T Consensus 79 ~s~p~~~~~~~~~~~~~~~-~~~~~dL~g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~i~~~~~ 157 (219)
T smart00062 79 FSDPYYKSGQVILVRKDSP-IKSLEDLKGKKVAVVAGTTGEELLKKLYPEAKIVSYDSQAEALAALKAGRADAAVADAPA 157 (219)
T ss_pred CCCCEECCCEEEEEECCCC-CCCHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEECHHH
T ss_conf 2455002444799965899-799799679779995798799999972878528985999999999983987999977999
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 999998458766732623677687707999818998999999999999997985999998767
Q gi|254781112|r 199 FFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~l~~I~~kyf 219 (219)
T smart00062 158 LAALVKQHGLPELKI-VGDPLDTPEGYAFAVRKGDPELLDKINKALKELKADGTLKKIYEKWF 219 (219)
T ss_pred HHHHHHHCCCCCEEE-ECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHCCC
T ss_conf 999998489998378-34677776419999959999999999999999996809999984569