HHsearch results for GI: 254781112 and protein with PDBid: 1mqi_A
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.98 E-value=1.6e-32 Score=219.54 Aligned_cols=222 Identities=17% Similarity=0.272 Sum_probs=176.8
Q ss_pred CCCEEEEECCCCCCEEEEEEC-----CCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-------------HHHHHHHHHCC
Q ss_conf 895899962899872487046-----998488988521678997629985556689-------------88988643103
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQD-----GRGELTGFDIDLIKEVAHRLNLKVEFFETA-------------VSGLITGLDTN 101 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d-----~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-------------~~~~~~~l~~g 101 (274)
.++|+|++ ..+|||.|...| ++++++||++|+++++++++|++++|++++ |++++.++++|
T Consensus 3 ~~t~~v~t-~~~pPf~~~~~~~~~~~~n~~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 81 (263)
T 1mqi_A 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 81 (263)
T ss_dssp CCCEEEEE-CCBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CEEEEEEE-CCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHC
T ss_conf 73999997-86599666736866547889768868999999999859977999877876321313567778999865402
Q ss_pred CCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEECCCHHHHHHHCCC---------
Q ss_conf 221100-003675675420023332222222221112222111112334---3202310101223320134---------
Q gi|254781112|r 102 RYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTD---KTVAQILGTDLSRFAKELK--------- 168 (274)
Q Consensus 102 ~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g---~~V~~~~g~~~~~~l~~~~--------- 168 (274)
++|+++ ++++|++|++.+.||.||+.....+++++++. +.+++||.+ .++|++.+.....+..+..
T Consensus 82 ~~D~~~~~~t~t~eR~~~~~FS~py~~~~~~~~~~~~~~-~~~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
T 1mqi_A 82 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP-IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWT 160 (263)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS-CCSHHHHHTCSSSEEECBSSSHHHHHHHHCCSHHHHHHHH
T ss_pred CCCEEEECCEECHHHHHHCCCCCCEECCCEEEEEECCCC-CCCHHHHHCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHH
T ss_conf 328898754606767520454576452652898631553-2347776067236998861779999998632204667899
Q ss_pred -----CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf -----542133685577775544321003665589999998458766732623677687707999818998999999999
Q gi|254781112|r 169 -----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEI 243 (274)
Q Consensus 169 -----~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~ 243 (274)
...+...+..+.+..+..++.|+++........+..+..... ......+....+++++++|+++ |++.||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ia~~k~~~-L~~~in~a 237 (263)
T 1mqi_A 161 YMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD--TMKVGGNLDSKGYGIATPKGSS-LGNAVNLA 237 (263)
T ss_dssp HHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHTTSTTCC--EEEESCCSCCEEECCEEETTCT-THHHHHHH
T ss_pred HHHCCCCCEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCC--EEEECCCCCCCEEEEEEECCHH-HHHHHHHH
T ss_conf 87515772574260899999985387546633489999999729987--6982456776138999908809-99999999
Q ss_pred HHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 99999798599999876788877
Q gi|254781112|r 244 LCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 244 l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
|.+|+++|++++|++|||+.+.-
T Consensus 238 L~~l~~~G~~~~i~~KwF~~~~~ 260 (263)
T 1mqi_A 238 VLKLNEQGLLDKLKNKWWYDKGE 260 (263)
T ss_dssp HHHHHHTTHHHHHHHHHHTTTCS
T ss_pred HHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 99999788999999986899998