HHsearch results for GI: 254781112 and protein with PDBid: 1p99_A
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=98.07 E-value=2.5e-06 Score=57.45 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=104.1
Q ss_pred CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-H-C
Q ss_conf 788788589589996289987248704699848898852167899762998555668-988988643103221100-0-0
Q gi|254781112|r 33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV-N-V 109 (274)
Q Consensus 33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~-~ 109 (274)
.+....+.++|+||+.+. |. .. .+.++..+++.|++++++.. ++.....+|.+|++|+.. + .
T Consensus 31 ~~~~~~~~k~i~IG~~~~--~~--------~~-----~~~~~~~~kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~ 95 (295)
T 1p99_A 31 TSTGSNNDKKVTIGVASN--DT--------KA-----WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHF 95 (295)
T ss_dssp ---------CEEEEESSS--CC--------HH-----HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEH
T ss_pred CCCCCCCCCEEEEEECCC--CH--------HH-----HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEECCCH
T ss_conf 888889996499996798--38--------99-----9999999997598899998178277999997599676751789
Q ss_pred CCCHHHH-----HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCHHHHHH----HCCCC----------
Q ss_conf 3675675-----420023332222222221112222111112-334320231010122332----01345----------
Q gi|254781112|r 110 AITPERQ-----KKYDFSIPYIAHRVLLVVRSDQQDIRSFKD-LTDKTVAQILGTDLSRFA----KELKS---------- 169 (274)
Q Consensus 110 ~~t~eR~-----~~~~fs~p~~~~~~~~~~~~~~~~~~~~~d-L~g~~V~~~~g~~~~~~l----~~~~~---------- 169 (274)
.+..... ..+....+......+++.++ ..++.| ++|++|++..+......+ ...+.
T Consensus 96 p~l~~~~k~~~g~~l~~v~~~~~~~~~~~~~~----~~~i~d~~~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~~~ 171 (295)
T 1p99_A 96 AFLDQYKKAHKGTKISALSTTVLAPLGIYSDK----IKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLA 171 (295)
T ss_dssp HHHHHHHHHCTTCCEEEEEEEEECCCEEECSS----CSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTT
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC----CCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 99999997679955999445211231012656----66321125898578336872899999999866927745888877
Q ss_pred ----CC------EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CCC-CCCCEEEEEECC--CHH
Q ss_conf ----42------1336855777755443210036655899999984587667326236-776-877079998189--989
Q gi|254781112|r 170 ----HL------VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RMK-DNSAVAFMMRKG--NNK 235 (274)
Q Consensus 170 ----~~------~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~k~--~~~ 235 (274)
.+ ..+.....+......|.+|+++.....+... ...+.....+.-.. ... .+....++.+.. +++
T Consensus 172 ~t~~DI~~n~~~~~~~~~~~a~~a~a~~~vDaa~i~~p~~~~a-~~~~~~~~l~~e~~~~~~~~~~~~~~~~r~~~~~~e 250 (295)
T 1p99_A 172 GTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKA-GKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNK 250 (295)
T ss_dssp CCGGGEEECTTCCEEEEECGGGTTGGGGTSSEEEECHHHHHHT-TCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCH
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHH-CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCH
T ss_conf 7876665444444545640667787327764899554399982-788666658864776666775379999784001979
Q ss_pred HHHHHHHHHHHHHHCCHHHH-HHHHHCCCCCCCCCC
Q ss_conf 99999999999997985999-998767888775689
Q gi|254781112|r 236 LTRSINEILCAIHLDGTYKK-IFDRYFDKNIISSVP 270 (274)
Q Consensus 236 L~~~in~~l~~l~~~G~~~~-I~~kw~g~d~~~~~~ 270 (274)
....+-+++ .+.+..+ |.+.|-|..++...|
T Consensus 251 ~vk~lv~a~----~s~E~~~~I~~~~~~~~~pv~~s 282 (295)
T 1p99_A 251 TYAKIVELY----HSKEAQKALQEDVKDGEKPVNLS 282 (295)
T ss_dssp HHHHHHHHH----HSHHHHHHHHHHHTTSSEECCCC
T ss_pred HHHHHHHHH----CCHHHHHHHHHCCCCCEEECCCC
T ss_conf 999999997----89999999997148875787399