HHsearch results for GI: 254781112 and protein with PDBid: 1xt8_A
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=100.00 E-value=2.4e-42 Score=280.28 Aligned_cols=226 Identities=24% Similarity=0.410 Sum_probs=197.4
Q ss_pred HHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC---CCCCCCCCCHHHHHHHHHCCCCCCCH-HCC
Q ss_conf 87885895899962899872487046998488988521678997629---98555668988988643103221100-003
Q gi|254781112|r 35 FRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN---LKVEFFETAVSGLITGLDTNRYDVLV-NVA 110 (274)
Q Consensus 35 ~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg---~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~ 110 (274)
..+.++++||||+.++||||+|. |++|++.||++|++++|++++| ++++|++.+|.+++..+++|++|+++ +.+
T Consensus 38 ~~i~~~g~l~Vgv~~~~pP~~~~--d~~G~~~G~~~Dl~~~ia~~Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~ 115 (292)
T 1xt8_A 38 DKIKQNGVVRIGVFGDKPPFGYV--DEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFT 115 (292)
T ss_dssp HHHHHHSSEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCB
T ss_pred HHHHCCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99860998999985898990699--9999887306899999999855897179999634786899998699771135565
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHH
Q ss_conf 675675420023332222222221112222111112334320231010122332013--454213368557777554432
Q gi|254781112|r 111 ITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 111 ~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~gr 188 (274)
+|++|++.+.||.||+.....++++++. .+++++||+|++||+..|+.++.++++. +.+++.+++.++++++|.+||
T Consensus 116 ~t~~R~~~~~fs~py~~~~~~~~~~~~~-~i~~~~dL~g~~V~v~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~l~~G~ 194 (292)
T 1xt8_A 116 QTPQRAEQVDFCSPYMKVALGVAVPKDS-NITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKR 194 (292)
T ss_dssp CCHHHHTTEEECCCCEEEEEEEEEETTC-CCCSSGGGTTSEEEEETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTS
T ss_pred CCCCHHCCCCCCCCEEECCCEEEEECCC-CCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCC
T ss_conf 6711210246675347415137872245-767477770066775158589999997100000000002220112443693
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH----HCCCC
Q ss_conf 10036655899999984587667326236776877079998189989999999999999979859999987----67888
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDR----YFDKN 264 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~k----w~g~d 264 (274)
+|+++.+.....+++++.+.. .....++....+++++++|++++|++.||++|++|++||++++|++| |||.|
T Consensus 195 vDa~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iav~k~~~~L~~~ln~~l~~l~~~G~~~~i~~k~~~k~fg~~ 271 (292)
T 1xt8_A 195 GDALSHDNTLLFAWVKDHPDF---KMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDD 271 (292)
T ss_dssp SSEEEEEHHHHHHHHHHCTTE---EEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGGGSCTT
T ss_pred EEEEEECHHHHHHHHHHCCCC---EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 699995699999999978997---89414678773399999799999999999999999977869999999988667999
Q ss_pred CC
Q ss_conf 77
Q gi|254781112|r 265 II 266 (274)
Q Consensus 265 ~~ 266 (274)
+-
T Consensus 272 ~~ 273 (292)
T 1xt8_A 272 VK 273 (292)
T ss_dssp CC
T ss_pred CC
T ss_conf 98