HHsearch results for GI: 254781112 and protein with PDBid: 2dvz_A
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.66 E-value=0.011 Score=34.84 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=104.7
Q ss_pred HHHHHHCCCCCCCCCCCHHH---HHHHHHCCCCCC---C-HH---CCCCHH-HHHHH------CCC--CCCCCCCCCCCC
Q ss_conf 78997629985556689889---886431032211---0-00---036756-75420------023--332222222221
Q gi|254781112|r 74 KEVAHRLNLKVEFFETAVSG---LITGLDTNRYDV---L-VN---VAITPE-RQKKY------DFS--IPYIAHRVLLVV 134 (274)
Q Consensus 74 ~~i~~~lg~~~~~~~~~~~~---~~~~l~~g~~D~---~-~~---~~~t~e-R~~~~------~fs--~p~~~~~~~~~~ 134 (274)
+.+.+.+|.++.++..|=.+ ....+.+..-|. + .. ....+- +.+.+ +|. ..+...+.++++
T Consensus 42 ~~l~k~~g~~v~V~N~pGagG~~g~~~~~~~~~Dg~ti~~~~~~~~~~~~~~~~~~~~~d~~~d~~~v~~~~~~~~v~~v 121 (314)
T 2dvz_A 42 QRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAV 121 (314)
T ss_dssp HHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEEEEEEEEEECEEEEE
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCEEEEC
T ss_conf 99999869987999669827899999998569999847761240544334541357898768875554202204303431
Q ss_pred CCCCCCCCCCCCCC--------CCCEEEE-CCCHH----HHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 11222211111233--------4320231-01012----2332013--45421336855777755443210036655899
Q gi|254781112|r 135 RSDQQDIRSFKDLT--------DKTVAQI-LGTDL----SRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274)
Q Consensus 135 ~~~~~~~~~~~dL~--------g~~V~~~-~g~~~----~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274)
++++ .+++++||. ..++|.. .|+.. ..+.+.. +.+.+.|.+..+++.+|..|++|+.+......
T Consensus 122 ~~~s-~~~t~~e~i~~ak~~p~~l~~g~~~~gs~~~~~~~~l~~~~G~~~~~Vpy~g~~~~~~all~G~vd~~~~~~~~~ 200 (314)
T 2dvz_A 122 NPKF-PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSS 200 (314)
T ss_dssp CTTS-SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEHHHH
T ss_pred CCCC-CCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEECCCHHH
T ss_conf 6777-756789999998639984576204664224567999999859975994048842446888679478985132111
Q ss_pred HHHHHHCCCCC---------C---CEEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99998458766---------7---3262367-----76877079998189-9899999999999999798599999876
Q gi|254781112|r 200 FNFLERRPHDG---------N---LFKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 200 ~~~~~~~~~~~---------~---~~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
..+...-.... . .++...+ ......+++..+++ +++.++.+.+++.++.+|.++++..++-
T Consensus 201 ~~~v~~G~lk~lav~~~~r~~~~pdvPT~~E~g~~~~~~~~~~gi~ap~gtp~e~v~~l~~a~~~~~~~~e~~~~~~~~ 279 (314)
T 2dvz_A 201 MPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 1133079713677627876765689997176454333221000003689999999999999999997099999999977