HHsearch results for GI: 254781112 and protein with PDBid: 2f5x_A

>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.21  E-value=0.026  Score=32.66  Aligned_cols=190  Identities=13%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             HHHHHHCCCCCCCCCCCHHH---HHHHHHCCCCCC----CH--HCCCCHH---HHHHH---CCC--CCCCCCCCCCCCCC
Q ss_conf             78997629985556689889---886431032211----00--0036756---75420---023--33222222222111
Q gi|254781112|r   74 KEVAHRLNLKVEFFETAVSG---LITGLDTNRYDV----LV--NVAITPE---RQKKY---DFS--IPYIAHRVLLVVRS  136 (274)
Q Consensus        74 ~~i~~~lg~~~~~~~~~~~~---~~~~l~~g~~D~----~~--~~~~t~e---R~~~~---~fs--~p~~~~~~~~~~~~  136 (274)
                      +.+.+.+|.++..+..|=.+   ....+.+..-|.    +.  +....+.   ....+   +|.  ......+.++++++
T Consensus        40 ~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~~~~~~~~~v~~  119 (312)
T 2f5x_A           40 ESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARG  119 (312)
T ss_dssp             HHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECT
T ss_pred             HHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCEEEEECC
T ss_conf             99999869987999789821599999999569999815652155344520015788884886330010004756898679


Q ss_pred             CCCCCCCCCCCCC--------CCEEEE-CCCHHH----HHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             2222111112334--------320231-010122----332013--4542133685577775544321003665589999
Q gi|254781112|r  137 DQQDIRSFKDLTD--------KTVAQI-LGTDLS----RFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN  201 (274)
Q Consensus       137 ~~~~~~~~~dL~g--------~~V~~~-~g~~~~----~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~  201 (274)
                      ++ .+++++||..        .+++.. .|+...    .+.+..  +.+.+.|....+.+..|..|++|+.+........
T Consensus       120 ~s-~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~~~~~~~~~~~  198 (312)
T 2f5x_A          120 DF-PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQ  198 (312)
T ss_dssp             TC-SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             88-40337899998733877614643789948899998999863984441356771777777536831312357300144


Q ss_pred             HHHHCCCCC---------C---CEEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             998458766---------7---3262367-----76877079998189-9899999999999999798599999876788
Q gi|254781112|r  202 FLERRPHDG---------N---LFKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRYFDK  263 (274)
Q Consensus       202 ~~~~~~~~~---------~---~~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~  263 (274)
                      +.+.-....         .   .++...+     .......++..+++ .++.++.+.+++.++.+|.++.+-.++ .|.
T Consensus       199 ~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~~~v~~l~~a~~~~~~~pe~~~~~~~-~g~  277 (312)
T 2f5x_A          199 QITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ-LGA  277 (312)
T ss_dssp             HHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred             HHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC
T ss_conf             5534675499982776554368999806527887503552025326779999999999999999739999999997-699


Q ss_pred             CC
Q ss_conf             87
Q gi|254781112|r  264 NI  265 (274)
Q Consensus       264 d~  265 (274)
                      ++
T Consensus       278 ~~  279 (312)
T 2f5x_A          278 EV  279 (312)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             61