HHsearch results for GI: 254781112 and protein with PDBid: 2pyy_A
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102}
Probab=100.00 E-value=3.6e-36 Score=242.03 Aligned_cols=218 Identities=27% Similarity=0.527 Sum_probs=187.6
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-HCCCCHHHHH
Q ss_conf 8958999628998724870469984889885216789976299855566-8988988643103221100-0036756754
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-NVAITPERQK 117 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~ 117 (274)
+.+|+||++ +||||+|. ++|++.||++|+++++++++|++++|++ .+|.+++++|++|++|+++ ++++|++|++
T Consensus 2 ~~~l~v~~~-~~PPf~~~---~~g~~~G~~~di~~~i~~~lg~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~ 77 (228)
T 2pyy_A 2 QQPLLVATR-VIPPFVLS---NKGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ 77 (228)
T ss_dssp --CEEEEEC-CBTTTBBC---C---CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH
T ss_pred CCCEEEEEC-CCCCEEEC---CCCEEEEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 964899967-71981874---49968885999999999996997399967999999999985997667102557988985
Q ss_pred HHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 200233322222222211122---22111112334320231010122332013454213368557777554432100366
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQ---QDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274)
.+.||.|++.....++.+++. ..+.++++|+|++|++..|+.++.++++...+++.+++..+++++|.+||+|+++.
T Consensus 78 ~~~~s~p~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr~d~~i~ 157 (228)
T 2pyy_A 78 NFDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVVF 157 (228)
T ss_dssp HSEECSCSEEEEEEEEEEC-----CCCCSGGGCTTCEEEEETTSHHHHHHHHTTCEEEEESSHHHHHHHHHTTSSSEEEE
T ss_pred HCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 34467872125613676314456534588788299889843896899999875202111324888887864594679996
Q ss_pred CHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 5589999998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
+...+.+++++.+... ..+...+....++++++++ +++|++.+|++|.+|++||++++|++||||..
T Consensus 158 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~ln~~l~~l~~~g~~~~I~~kyf~~~ 224 (228)
T 2pyy_A 158 DAPVLLFYAANEGKGK--VEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFDPK 224 (228)
T ss_dssp EHHHHHHHHHTTTTTT--EEEEEEEEEEEEECCEECT-TCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHCCCCC--EEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 3188899998468883--5883466766328999779-98999999999999997979999999748997