HHsearch results for GI: 254781112 and protein with PDBid: 2qry_A
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=92.39 E-value=0.52 Score=24.59 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=97.0
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHH----CCCCCCCHHCC
Q ss_conf 788589589996289987248704699848898852167899762998555668-9889886431----03221100003
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLD----TNRYDVLVNVA 110 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~----~g~~D~~~~~~ 110 (274)
.++.+++|+|.+...|.+ +.+.+ .+|+++.-++.|++|+++.. +...++..++ ++++|++.+..
T Consensus 18 ~~~~~~~l~Vy~~~~~~~-----~~~~~------~~i~~~FE~~~gi~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~ 86 (330)
T 2qry_A 18 GSHMKPVLTVYTYDSFAA-----DWGPG------PVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLD 86 (330)
T ss_dssp ----CCEEEEEECHHHHS-----TTSSH------HHHHHHHHTTSCSEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEE
T ss_pred CCCCCCEEEEEECCCCCC-----CCCCC------HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 656798799997876553-----55777------7999999998797899995899899999999727999832999756
Q ss_pred C-CHHHHHHHC-----------------CCC----CCCCCCCCCCCCCC--CCCCCCCCCCCC----CCEEEECCC--H-
Q ss_conf 6-756754200-----------------233----32222222221112--222111112334----320231010--1-
Q gi|254781112|r 111 I-TPERQKKYD-----------------FSI----PYIAHRVLLVVRSD--QQDIRSFKDLTD----KTVAQILGT--D- 159 (274)
Q Consensus 111 ~-t~eR~~~~~-----------------fs~----p~~~~~~~~~~~~~--~~~~~~~~dL~g----~~V~~~~g~--~- 159 (274)
. .-++...-. +.. |+.....++..+++ ....++++||-. -+|+..... .
T Consensus 87 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~p~s~~dL~~p~~~gki~~~~~~~~~~ 166 (330)
T 2qry_A 87 NNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTP 166 (330)
T ss_dssp GGGHHHHHHHTCBCCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTCSSCCSSHHHHHHCSSCCCEEEECTTTCHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCCCHHHCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCHH
T ss_conf 77899998747521245763330364232366503204524788743322568997789985140241257427753477
Q ss_pred -HH--------------HHHHCCCCC-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf -22--------------332013454-21336855777755443210036655899999984587667326236776877
Q gi|254781112|r 160 -LS--------------RFAKELKSH-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS 223 (274)
Q Consensus 160 -~~--------------~~l~~~~~~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (274)
.. ++..+...+ .....+..+....+.+|++++.+........................+.....
T Consensus 167 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~i~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~ 246 (330)
T 2qry_A 167 GLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQ 246 (330)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHTTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEECCCCEEEE
T ss_conf 89999999985795699999999872676666646888765047753899951579999985579851044067870772
Q ss_pred CEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 079998189--98999999999999997985999998767
Q gi|254781112|r 224 AVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 224 ~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
.-++++.|+ ++++...|=..+- |.+.++++....
T Consensus 247 ~~~~~I~k~a~~~~~A~~Fidfll----s~E~Q~~~a~~~ 282 (330)
T 2qry_A 247 VEVAARTAASKQPELAQKFLQFMV----SPAFQNAIPTGN 282 (330)
T ss_dssp EEEEEEBTTCSCHHHHHHHHHHHT----SHHHHTTHHHHT
T ss_pred EHHHHHHCCCCCHHHHHHHHHHHC----CHHHHHHHHHHC
T ss_conf 146665348997699999999975----999999999747