HHsearch results for GI: 254781112 and protein with PDBid: 2rc8_A
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.97 E-value=9.7e-32 Score=214.64 Aligned_cols=198 Identities=14% Similarity=0.239 Sum_probs=164.4
Q ss_pred CEEEEEEEEHHHHHHHCCCCCCCCC-----------CCHHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 4889885216789976299855566-----------898898864310322110-0003675675420023332222222
Q gi|254781112|r 64 ELTGFDIDLIKEVAHRLNLKVEFFE-----------TAVSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRVL 131 (274)
Q Consensus 64 ~~~G~~~dl~~~i~~~lg~~~~~~~-----------~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~ 131 (274)
.+.||++||+++|++++|++++++. .+|++++.+|++|++|++ .++++|+||++.++||.||+..+..
T Consensus 67 ~~~Gf~iDL~~~ia~~lg~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~~~v~Fs~Py~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CCEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHCEECCCEECCCCE
T ss_conf 73856899999999981996799980688634536788899999997799659953013687688531741204126604
Q ss_pred CCCCCCCCCCCCCCC--CC----CCCEEEECCCHHHHHHHCCC------CCCEEECCHHHHHHHHHHH--HHHCCCCCHH
Q ss_conf 221112222111112--33----43202310101223320134------5421336855777755443--2100366558
Q gi|254781112|r 132 LVVRSDQQDIRSFKD--LT----DKTVAQILGTDLSRFAKELK------SHLVFSHNFEQSLQLLLSK--RTDATMIPDI 197 (274)
Q Consensus 132 ~~~~~~~~~~~~~~d--L~----g~~V~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~g--rvD~~~~~~~ 197 (274)
++++++...+.++.| +. |.++|++.|+..+.++++.. .....+.+..+++++|..| |+|+++.+..
T Consensus 147 i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa~i~d~~ 226 (294)
T 2rc8_A 147 ILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA 226 (294)
T ss_dssp EEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH
T ss_pred EEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEEEEECHH
T ss_conf 78745887544322124047733238996664289999886404333103553038779999876427815899982368
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 9999998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 198 PFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
.+.+++.+.+... +.....+....+++++++|+++ |++.||++|.+|+++|++++|++||||.+
T Consensus 227 ~~~~~~~~~~~~~--l~~v~~~~~~~~~gia~~k~s~-l~~~in~~l~~l~~~G~l~~L~~Kwfg~~ 290 (294)
T 2rc8_A 227 LLDYEVSIDADCK--LLTVGKPFAIEGYGIGLPPNSP-LTSNISELISQYKSHGFMDVLHDKWYKVV 290 (294)
T ss_dssp HHHHHHHTCSSSC--EEECSCCEEEEEECCEECTTCT-HHHHHHHHHHHHHHTTHHHHHHHHHCCC-
T ss_pred HHHHHHHHCCCCC--EEEECCCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 8999998689986--8990687776218999809849-99999999999997989999998637999