HHsearch results for GI: 254781112 and protein with PDBid: 2v3u_A
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.97 E-value=5.6e-31 Score=209.93 Aligned_cols=220 Identities=17% Similarity=0.259 Sum_probs=171.7
Q ss_pred CCEEEEECCCCCCEEEEEECC---CCCEEEEEEEEHHHHHHHCCCCCCCCCCC------------HHHHHHHHHCCCCCC
Q ss_conf 958999628998724870469---98488988521678997629985556689------------889886431032211
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDG---RGELTGFDIDLIKEVAHRLNLKVEFFETA------------VSGLITGLDTNRYDV 105 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~---~g~~~G~~~dl~~~i~~~lg~~~~~~~~~------------~~~~~~~l~~g~~D~ 105 (274)
.+|||++. ++|||.|...+. .|+++||++||+++|++++|++++++.+| |++++..+..|++|+
T Consensus 3 ~~lrV~~~-~~pP~~~~~~~~~g~~~~~~G~~vdl~~~ia~~lg~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~D~ 81 (265)
T 2v3u_A 3 VVLRVVTV-LEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADI 81 (265)
T ss_dssp CEEEEEEC-CBTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSE
T ss_pred CEEEEEEC-CCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 68999985-55997798067789999788809999999999839967999846753143126888899877760685436
Q ss_pred CH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEECCCHHHHH------------------
Q ss_conf 00-00367567542002333222222222111222211111---233432023101012233------------------
Q gi|254781112|r 106 LV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFK---DLTDKTVAQILGTDLSRF------------------ 163 (274)
Q Consensus 106 ~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~---dL~g~~V~~~~g~~~~~~------------------ 163 (274)
++ +.++|++|++.+.||.||+..+..++++++.. ....+ +..+..+++..+....+.
T Consensus 82 ~~~~~~~t~~R~~~~~fs~py~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (265)
T 2v3u_A 82 GISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS-IQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQM 160 (265)
T ss_dssp ECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC-CCSHHHHHTCSSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHH
T ss_pred EECCCCCCHHHHHHEEECCCEEECCEEEEECCCCC-CCCHHHHCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 60446546777521520464365133444202355-32256746862566401300179999986387521120257899
Q ss_pred ---HHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf ---20134542133685577775544321003665589999998458766732623677687707999818998999999
Q gi|254781112|r 164 ---AKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI 240 (274)
Q Consensus 164 ---l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~i 240 (274)
+...+..+..+.+..+++.++.+|+ |+.+.+.....+.+.+.... . +.....+....+++++++|++ +|++.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~K~s-~l~~~~ 236 (265)
T 2v3u_A 161 WRMINRSNGSENNVLESQAGIQKVKYGN-YAFVWDAAVLEYVAINDPDC-S-FYTVGNTVADRGYGIALQHGS-PYRDVF 236 (265)
T ss_dssp HHHHCC-----CCBSSHHHHHHHHHHSS-CEEEEEHHHHHHHHHHCTTC-C-EEEEC---CCEEECCEEETTC-TTHHHH
T ss_pred HHHHHCCCCCCEECCCHHHHHHHHHCCC-EEEEECHHHHHHHHHHCCCC-C-EEECCCCCCCCEEEEEEECCH-HHHHHH
T ss_conf 9987315540011168999999997699-09995379999999857897-5-898157777733899996981-999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 99999999798599999876788877
Q gi|254781112|r 241 NEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 241 n~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
|++|.+|+++|++++|++|||+++--
T Consensus 237 n~~l~~~~~~G~~~~i~~kwf~~~~~ 262 (265)
T 2v3u_A 237 SQRILELQQSGDMDILKHKWWPKNGQ 262 (265)
T ss_dssp HHHHHHHHHHTHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 99999999798999999987899994