HHsearch results for GI: 254781112 and protein with PDBid: 3del_B
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=100.00 E-value=8e-41 Score=270.81 Aligned_cols=225 Identities=21% Similarity=0.259 Sum_probs=197.2
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-HHCCCCHHHHH
Q ss_conf 58958999628998724870469984889885216789976299855566898898864310322110-00036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL-VNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~ 117 (274)
.+.+|+||++++||||+|. |++|++.||++|+++++++++|++++|+.++|++++..+++|++|++ .+++++++|++
T Consensus 9 ~~~~l~Vg~~~~~pP~~~~--~~~G~~~G~~vDi~~~ia~~lg~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~r~~ 86 (242)
T 3del_B 9 NSEKFIVGTNATYPPFEFV--DKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLK 86 (242)
T ss_dssp --CEEEEEECSCBTTTBEE--CTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHT
T ss_pred CCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 8996999989988991589--99998887299999999999699769997898999999975986610035769988983
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC-CCCCEEECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 20023332222222221112222111112334320231010122332013-45421336855777755443210036655
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL-KSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
.+.|+.||+.....++.+.+...+++++||+|++||+..|+.++.++++. +.+++.+++..+++++|.+||+|+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Vgv~~gs~~~~~l~~~~~~~i~~~~~~~~~~~~L~~griD~~i~~~ 166 (242)
T 3del_B 87 EILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEP 166 (242)
T ss_dssp TEEEEEEEEEEESEEEEEEESCCSCCCCGGGSSCEEEETTSHHHHHHHHSTTCCEEEESSHHHHHHHHHTTSSSEEEECH
T ss_pred HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCEEEEEECH
T ss_conf 13678643235532688631543321344202200242574358999856587079861453125688639743999669
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 899999984587667326236776877079998189989999999999999979859999987678887
Q gi|254781112|r 197 IPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
..+.+++++.+................++++++++++++|++.||++|++|++||++++|++||+-.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~k~~~~l~~~ln~al~~l~~~G~~~~I~~ky~l~~~ 235 (242)
T 3del_B 167 SIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNL 235 (242)
T ss_dssp HHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH
T ss_conf 999999985887634542268765432689999489999999999999999978789999999799546