HHsearch results for GI: 254781112 and protein with PDBid: 3fzv_A
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.63 E-value=0.013 Score=34.54 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
.++++||+.+.... .+..+++..+.+.. ++++++...+.+..++.|.+|++|++....... ...
T Consensus 94 ~~~~~i~~~~~~~~-------------~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~--~~~ 158 (306)
T 3fzv_A 94 AGQIDIGCFETVAP-------------LYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDL--DST 158 (306)
T ss_dssp CEEEEEEEEGGGHH-------------HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSC--CTT
T ss_pred CCEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--CCC
T ss_conf 75268885047899-------------998999999985389749999978779999999859973688835789--987
Q ss_pred HCCCCCCC-CCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCHH----HHHHHCCCC---CCEEECCHHHHHHHHHH
Q ss_conf 00233322-22222221112222----11111233432023101012----233201345---42133685577775544
Q gi|254781112|r 119 YDFSIPYI-AHRVLLVVRSDQQD----IRSFKDLTDKTVAQILGTDL----SRFAKELKS---HLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 119 ~~fs~p~~-~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274)
.. ..|.+ .....++++++.+. ..+++||.+..+....+... ..+..+.+. ....+++......++..
T Consensus 159 ~~-~~~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 237 (306)
T 3fzv_A 159 IE-TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQ 237 (306)
T ss_dssp EE-EEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHT
T ss_pred CE-EEEECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 25-89921462689996264265337889999981799898459876510455676538775425467888999999980
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCE-EE-CCCCCCCCCEEEEEECCC
Q ss_conf 321003665589999998458766732-62-367768770799981899
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLF-KI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~k~~ 233 (274)
|..=+++ +.... .........+ .. ...+.....+++..+++.
T Consensus 238 g~gi~~l-p~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 281 (306)
T 3fzv_A 238 GFGFSLL-VTRPH----SECTYDGKKVVMVDLAEPVSTSGLAAAWLKRA 281 (306)
T ss_dssp TSCBEEE-CCCCS----CSBCTTSCBEEEEEESSCCCBCCCEEEEETTS
T ss_pred CCEEEEE-EHHHH----HHHHHCCCCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 9949994-25878----89875699779986778876427999998989